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brentp
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vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0973-5
MIT License
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Make header case-insensitive
#58
garrettjstevens
closed
7 years ago
1
api.go:655: tabix: name count mismatch:
#57
sergiigladchuk
closed
7 years ago
2
'Index out of range' does not point to exact annotation
#56
sergiigladchuk
opened
7 years ago
4
add built-in command setID available as a postannotation
#55
brentp
closed
4 years ago
0
support for multi-allelics with 'self'
#54
brentp
closed
7 years ago
0
start of fixing 'self' for multi-allelics.
#53
brentp
closed
7 years ago
0
Multiallelic sites
#52
smottarella
closed
7 years ago
3
Write into the ID column
#51
vladsavelyev
closed
7 years ago
20
vcf - annotate by column possible?
#50
colindaven
closed
7 years ago
2
Added typecasting suffixes to README
#49
matthdsm
closed
7 years ago
3
annotate with multisample vcf
#48
matthdsm
closed
7 years ago
15
tsv output
#47
dwaggott
closed
7 years ago
8
match ALT in bed/tsv files
#46
dwaggott
closed
7 years ago
1
add DP4
#45
brentp
opened
7 years ago
0
Slow annotation with CADD
#44
davemcg
closed
6 years ago
23
Keep annotation source field Description
#43
xuyangy
closed
7 years ago
11
Float type with value "-0" in annoation VCF file becomes "-" in annotated VCF file
#42
xuyangy
closed
7 years ago
3
Not handling identical start/end coordinates
#41
roryk
closed
7 years ago
2
Database not getting annotated with adjusted allele count from Exac
#40
komalsrathi
closed
8 years ago
11
Error in cadd2vcf.py: UnboundLocalError: local variable 'header' referenced before assignment
#39
komalsrathi
closed
8 years ago
8
New release
#38
roryk
closed
8 years ago
3
Example error
#37
redcoon23
closed
8 years ago
2
CSQ tag
#36
sigven
closed
8 years ago
4
Problem with VCF file converted from BED
#35
snashraf
closed
8 years ago
2
Type mismatch for 'shared.Annotation.Columns': Expected integer but found 'string'.
#34
komalsrathi
closed
8 years ago
4
Add optional Desc field to set the description in the header.
#33
roryk
closed
8 years ago
6
REF/ALTs
#32
roryk
closed
8 years ago
6
error using AF calc example
#31
dwaggott
closed
8 years ago
9
fault tolerance
#30
dwaggott
closed
8 years ago
4
lua function on samples
#29
dwaggott
closed
8 years ago
2
-permissive-overlap per annotation block
#28
dwaggott
closed
8 years ago
2
bam: add op to count forward and reverse reads
#27
brentp
closed
8 years ago
0
Collecting GRCh38 annotations
#26
komalsrathi
closed
8 years ago
4
Max operation
#25
snashraf
closed
8 years ago
15
function in lua file not working
#24
komalsrathi
closed
8 years ago
10
use png instead of pdf
#23
arq5x
closed
8 years ago
0
add overview figure
#22
arq5x
closed
8 years ago
1
Truncated annotations
#21
dgaston
closed
8 years ago
13
Faster find?
#20
brentp
closed
7 years ago
0
Append to existing INFO tag
#19
sigven
closed
7 years ago
5
profile blocking
#18
brentp
closed
7 years ago
1
"go build" with freshly cloned repo: irelate go package error
#17
brainstorm
closed
8 years ago
3
use Number from source file when op == "self"
#16
brentp
closed
8 years ago
9
Annotations from Genotype fields
#15
dgaston
opened
8 years ago
9
too many open files
#14
sigven
closed
8 years ago
7
error when trying to use a non-existent field in a lua op
#13
brentp
closed
8 years ago
0
error early when lua op is used without -lua arg
#12
brentp
closed
8 years ago
0
Closest
#11
deber1980
opened
8 years ago
16
Index out of range
#10
drramki
closed
8 years ago
10
too many open files
#9
sigven
closed
8 years ago
12
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