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brentp
/
vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0973-5
MIT License
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rs113993960 aka CFTR DeltaF508, invisible to vcfanno
#108
cariaso
closed
5 years ago
4
api.go:789: unexpected header line
#107
BriMeireles
opened
5 years ago
4
Using vcfanno to annotate SV calls with GNOMAD SV frequencies
#106
naumenko-sa
opened
5 years ago
10
Error with postannotation
#105
PedroBarbosa
closed
5 years ago
5
Field: FILTER not being added for gnomad annotations
#104
cvlvxi
closed
5 years ago
10
Add Makefile
#103
zamaudio
closed
5 years ago
1
Cannot annotate on gnomad 2.1 but working with gnomad 2.0
#102
cvlvxi
closed
5 years ago
3
Please fix the tree so it compiles
#101
zamaudio
closed
5 years ago
1
panic: interface conversion: interface {} is float64, not int
#100
wdecoster
closed
5 years ago
5
invalid memory address or nil pointer dereference
#99
komalsrathi
closed
5 years ago
2
how to add "." for variants outside intervals
#98
jungminchoilab
closed
5 years ago
4
Leading / added to filename from config file
#97
barrymoore
closed
5 years ago
4
Add citation link
#96
hdashnow
closed
5 years ago
1
panic: intervals out of order within file: starts at: 4294967295 and 0
#95
wdecoster
closed
5 years ago
19
Missing annotations
#94
Thatguy027
closed
5 years ago
17
Pos(1-based) syntax error when annotation dbNSFP data
#93
settys02
closed
6 years ago
4
Proposal for `-slightly-permission-overlap` matching pos + REF
#92
chapmanb
closed
6 years ago
7
v1.4 of CADD header with '#chr' not '#chrom'
#91
janakn
closed
6 years ago
3
Interesting failure to include annotations from .vcf.bgz instead of .vcf.gz
#90
Phillip-a-richmond
closed
6 years ago
1
Incorrect AC, AF, AN, DP values after merging multiple annotated vcfs.
#89
gezthxbio
closed
6 years ago
1
Could vcfanno annotate mutation type ? like frame-shift/Premature-Stop for indel, Synonymous/Stop_nonsyn for snp
#88
orangeSi
closed
6 years ago
2
multi allelic vcf: vcfanno is not respecting VCF number format and is flipping scores
#87
RoanKanninga
opened
6 years ago
7
flag processing issue
#86
jgrady-omico
closed
5 years ago
3
Produces empty INFO fields
#85
garrettjstevens
closed
6 years ago
2
CNV and SV annotation
#84
alphahmed18
closed
6 years ago
1
multiple CADD annotations files
#83
RoanKanninga
closed
6 years ago
10
-base-path duplicates the string
#82
sergiigladchuk
closed
6 years ago
3
allow non-standard file names
#81
brentp
opened
6 years ago
1
minor typos
#80
pdiakumis
closed
6 years ago
1
max of NA returns 0
#79
brentp
opened
6 years ago
0
Annotate with 1000 genome data
#78
maggie-fu
closed
6 years ago
9
Extract specific field from one column in BED
#77
maggie-fu
closed
6 years ago
1
Feature request - specify annotation file paths at runtime
#76
jdidion
closed
6 years ago
1
Change field type for BED file annotation
#75
maggie-fu
closed
6 years ago
1
custom lua error- reciprocal overlap
#74
maggie-fu
closed
6 years ago
5
feature request - indicate annotation file has a subset of chroms
#73
drmjc
opened
7 years ago
2
Go vendoring?
#72
ilovezfs
opened
7 years ago
3
api.go:263: WARNING: out of bounds with ref: [T], alt: [A T], vals: [%!s(int=227542)]
#71
alig99
closed
7 years ago
8
GEMINI configuration: match latest ClinVar
#70
chapmanb
closed
7 years ago
0
Change header ##INFO description to "Number=A"?
#69
garrettjstevens
closed
7 years ago
5
Separator of multiple hits and allele specific flag
#68
kyasuno
closed
7 years ago
25
Feature: read from stdin
#67
matthdsm
closed
7 years ago
2
Compressed VCF/BCF output
#66
dancooke
closed
7 years ago
1
Recognising reserved INFO fields
#65
dancooke
opened
7 years ago
2
vcfanno gzip IO related errors (race condition with multiple threads to bgzf.Reader)
#64
chapmanb
closed
7 years ago
9
Custom postannotation description
#63
liqg
opened
7 years ago
1
better gene annotation
#62
brentp
opened
7 years ago
0
Sorting large VCF file fails
#61
sa9
closed
7 years ago
1
Make header case-insensitive
#60
garrettjstevens
closed
7 years ago
0
GTF annotation fails: index out of error
#59
mpschr
opened
7 years ago
7
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