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GATK-gCNV-publication
Supporting code and materials for GATK gCNV publication
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Cell lines with no match
#19
MaryGoAround
opened
2 months ago
0
Fixed parsing of the joint gCNV callset
#18
asmirnov239
closed
2 years ago
0
Removed a print statement
#17
asmirnov239
closed
2 years ago
0
Latest changes to the gCNV/XHMM validation script.
#16
asmirnov239
closed
2 years ago
0
Added XHMM wdl
#15
asmirnov239
closed
4 years ago
0
Drastically sped up callset matrix view creation, plus added tests, a…
#14
asmirnov239
closed
4 years ago
0
Added truth preprocessing scripts
#13
asmirnov239
closed
4 years ago
0
Add Jack/Isaac's mega script to use for joint genotyping
#12
ldgauthier
closed
4 years ago
0
Initial commit of the validation package
#11
asmirnov239
closed
4 years ago
0
Added existing scripts and plots
#10
asmirnov239
closed
4 years ago
0
Implement and evaluate improvements for common calling.
#9
samuelklee
opened
4 years ago
0
Does opening an issue make me a collaborator?
#8
samuelklee
closed
4 years ago
1
Set up terra workspaces for the complete end-to-end evaluation of each cohort
#7
asmirnov239
opened
4 years ago
1
Write validation script
#6
asmirnov239
opened
4 years ago
0
Populate directory with public resources required to run gCNV and other tool workflows
#5
asmirnov239
opened
4 years ago
0
Wrap scripts for XHMM, CoNIFER and ExomeDepth in WDLs
#4
asmirnov239
opened
4 years ago
0
Create a blacklist for filtering out PAR regions
#3
asmirnov239
opened
4 years ago
1
Select subset of evaluation samples and upload them to Google cloud bucket
#2
asmirnov239
opened
4 years ago
1
Add scripts for running pipelines of XHMM, CoNIFER and ExomeDepth.
#1
asmirnov239
opened
4 years ago
0