broadinstitute GATK-gCNV-publication issues

broadinstitute / GATK-gCNV-publication

Supporting code and materials for GATK gCNV publication

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issues

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Cell lines with no match

#19 MaryGoAround opened 2 months ago
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Fixed parsing of the joint gCNV callset

#18 asmirnov239 closed 2 years ago
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Removed a print statement

#17 asmirnov239 closed 2 years ago
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Latest changes to the gCNV/XHMM validation script.

#16 asmirnov239 closed 2 years ago
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Added XHMM wdl

#15 asmirnov239 closed 4 years ago
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Drastically sped up callset matrix view creation, plus added tests, a…

#14 asmirnov239 closed 4 years ago
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Added truth preprocessing scripts

#13 asmirnov239 closed 4 years ago
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Add Jack/Isaac's mega script to use for joint genotyping

#12 ldgauthier closed 4 years ago
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Initial commit of the validation package

#11 asmirnov239 closed 4 years ago
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Added existing scripts and plots

#10 asmirnov239 closed 4 years ago
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Implement and evaluate improvements for common calling.

#9 samuelklee opened 4 years ago
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Does opening an issue make me a collaborator?

#8 samuelklee closed 4 years ago
1
Set up terra workspaces for the complete end-to-end evaluation of each cohort

#7 asmirnov239 opened 4 years ago
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Write validation script

#6 asmirnov239 opened 4 years ago
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Populate directory with public resources required to run gCNV and other tool workflows

#5 asmirnov239 opened 4 years ago
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Wrap scripts for XHMM, CoNIFER and ExomeDepth in WDLs

#4 asmirnov239 opened 4 years ago
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Create a blacklist for filtering out PAR regions

#3 asmirnov239 opened 4 years ago
1
Select subset of evaluation samples and upload them to Google cloud bucket

#2 asmirnov239 opened 4 years ago
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Add scripts for running pipelines of XHMM, CoNIFER and ExomeDepth.

#1 asmirnov239 opened 4 years ago
0