broadinstitute cromwell-tools issues

broadinstitute / cromwell-tools

A collection of Python clients and accessory scripts for interacting with the Cromwell

https://cromwell-tools.readthedocs.io

BSD 3-Clause "New" or "Revised" License

22 stars 9 forks source link

issues

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[Bug] jes_gcs_root is always default

#109 morganecf opened 1 year ago
1
Adding workflow URL option

#108 AlesMaver closed 1 year ago
1
Bump numpy from 1.15.2 to 1.22.0 in /notebooks

#107 dependabot[bot] opened 2 years ago
0
Update docs and tests to indicate Python3.5 support.

#106 rexwangcc closed 4 years ago
1
ADD #104 remove use of f-string literals to allow support for python3.5

#105 jeremyhofer closed 4 years ago
0
cromwell-tools does not support python3.5

#104 jeremyhofer closed 4 years ago
3
[Feature Request] Include program executables in the releases

#103 rexwangcc opened 4 years ago
0
Add code cov for PR tests.

#102 rexwangcc closed 4 years ago
1
Add test cases for CLI.

#101 rexwangcc closed 4 years ago
0
CLI shows help without args

#100 rexwangcc closed 4 years ago
0
Switch to GitHub actions

#99 rexwangcc closed 4 years ago
0
[CI/CD] Migrate CI/CD to Github Actions

#98 rexwangcc closed 4 years ago
0
Error when running with no input arguments

#97 lbergelson closed 4 years ago
2
Adding response object to HTTPError raised by cromwell_tools.api

#96 kgalens closed 4 years ago
1
HTTPError Raised without including requests.Response object

#95 kgalens closed 4 years ago
0
Update requirements for task_runtime functionality

#94 charlesdyan closed 5 years ago
0
Add task runtime diagnostic

#93 charlesdyan closed 5 years ago
0
Add patch labels to api

#92 charlesdyan closed 5 years ago
0
Fix the broken links on readme.

#91 rexwangcc closed 5 years ago
0
Broken link in Read The Docs

#90 kbergin closed 5 years ago
1
Fix the bug introduced in the last 2 PRs.

#89 rexwangcc closed 5 years ago
0
Automate the PyPI release process with Travis CI.

#88 rexwangcc closed 5 years ago
0
Automate the publish process

#87 rexwangcc closed 5 years ago
1
Stronger types and more hierarchical directory structures for upcoming sub-packages

#86 rexwangcc closed 5 years ago
0
Fix a typo in the setup.py file.

#85 rexwangcc closed 5 years ago
0
missing comma in setup.py ?

#84 notestaff closed 5 years ago
1
[Feature Request] New version detection

#83 rexwangcc opened 5 years ago
2
updating travis badge to point to travis-ci.com

#82 lbergelson closed 5 years ago
0
[Feature Request] Submit jobs with labels through the command line directly

#81 rexwangcc opened 5 years ago
0
[Feature Request] A diagnostic/analysis toolkit for workflows development

#80 rexwangcc opened 5 years ago
0
Add contribute sections to the readme

#79 rexwangcc opened 5 years ago
0
[Testing] Add tests for AWS-based Cromwells

#78 rexwangcc opened 5 years ago
0
[Testing] Add tests for multiple versions of Crowmell

#77 rexwangcc opened 5 years ago
0
Roughly implement the /metadata in both API and CLI.

#76 rexwangcc closed 5 years ago
2
Fix git linguist analysis.

#75 rexwangcc closed 5 years ago
0
[Discussion] Whether to support storing credentials locally

#74 rexwangcc opened 5 years ago
1
[Feature Request] Add support for gs path

#73 rexwangcc opened 5 years ago
0
Fix and improve docs

#72 rexwangcc closed 5 years ago
0
Fix some issues with the submit command and the CLI arguments.

#71 rexwangcc closed 5 years ago
0
Add support for JES-backend OAuth-enabled Cromwells

#70 rexwangcc closed 5 years ago
1
Clean up PR templates

#69 rexwangcc closed 5 years ago
0
Adding getLogger to cromwell_auth to prevent duplicate logging

#68 kgalens closed 5 years ago
0
Duplicate logging when using CromwellAuth.from_no_authentication

#67 kgalens closed 4 years ago
1
Format with Black and Flake8

#66 rexwangcc closed 5 years ago
0
Add linting and drop support for Python 2.x

#65 rexwangcc closed 5 years ago
0
Add support for service account contents.

#64 rexwangcc closed 5 years ago
0
The OAuth token times out when using the `wait` command to monitor a long-running workflow

#63 rexwangcc opened 5 years ago
0
There needs to be "retry" around `wait`

#62 rexwangcc opened 5 years ago
0
Fix a bug that prevents submitting a zipped file as dependency.

#61 rexwangcc closed 5 years ago
1
Fix the issues with CLI

#60 rexwangcc closed 5 years ago
2