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broadinstitute
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epi-SHARE-seq-pipeline
Epigenomics Program pipeline to analyze SHARE-seq data.
MIT License
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Correction workflow
#157
mei-knudson
opened
1 month ago
0
ArchR flag
#156
mei-knudson
closed
2 months ago
0
Chromap read format memory
#155
mei-knudson
closed
3 months ago
0
Chromap read format
#154
mei-knudson
closed
3 months ago
2
Update correction v2
#153
mei-knudson
closed
4 months ago
0
- Adding minimum of 0 to barcode rank plots
#152
mei-knudson
closed
5 months ago
0
Plot fixes
#151
mei-knudson
closed
7 months ago
0
Dev snapatac
#150
emattei
closed
7 months ago
0
- Log-log scale
#149
mei-knudson
closed
7 months ago
1
Html fix
#148
mei-knudson
closed
7 months ago
1
- exit ArchR if <500 barcodes pass QC
#147
sidwekhande
closed
9 months ago
0
Html fix
#146
mei-knudson
closed
9 months ago
0
Demux qc fix
#145
mei-knudson
closed
9 months ago
0
Correction fixes
#144
mei-knudson
closed
10 months ago
0
Bam to raw fastq fix
#143
mei-knudson
closed
10 months ago
0
Bam to raw fastq fix
#142
mei-knudson
closed
10 months ago
1
Kd dmux barcodes
#141
kdong2395
closed
10 months ago
0
Chromap v2
#140
emattei
closed
10 months ago
0
Chromap v2
#139
emattei
closed
10 months ago
0
- bump seurat version in dorcs task
#138
sidwekhande
closed
11 months ago
0
update insert size plot script
#137
mei-knudson
closed
11 months ago
2
Michael nums output
#136
shriverm1
opened
1 year ago
1
Cell annotation
#135
lzj1769
closed
1 year ago
0
Merge pkr
#134
emattei
closed
1 year ago
0
Merge pkr
#133
emattei
closed
1 year ago
0
Merge pkr
#132
emattei
closed
1 year ago
0
updating dev
#131
emattei
closed
1 year ago
0
Merge pkr
#130
mei-knudson
closed
1 year ago
1
Check if Lanes exists in metadata csv; if so only look for barcode in specified lane
#129
nchernia
closed
1 year ago
0
Poly g
#128
mei-knudson
closed
1 year ago
0
Add mito_only.bam formitochondrial mutation analysis
#127
ruochiz
closed
6 days ago
0
demux by lane
#126
emattei
closed
1 year ago
0
GX vs gx tag in STARsolo
#125
emattei
opened
1 year ago
0
pretty plate QC
#124
nchernia
opened
1 year ago
0
Remove ArchR 'strict' call
#123
sidwekhande
closed
1 year ago
0
Archr mem factor
#122
emattei
closed
1 year ago
0
Archr mem factor
#121
sidwekhande
closed
1 year ago
0
Sambamba
#120
emattei
closed
1 year ago
0
Bowtie2 sambamba
#119
emattei
closed
1 year ago
0
Sambamba
#118
emattei
closed
1 year ago
0
Empty pkr for ATAC remove _
#117
emattei
opened
1 year ago
0
Seurat ATAC & RNA UMAP integration
#116
mei-knudson
opened
1 year ago
0
Barcode correction
#115
mei-knudson
closed
1 year ago
2
- patch cisCor() infinite loop bug on zero common barcodes
#114
sidwekhande
closed
1 year ago
0
no-align flag
#113
emattei
closed
1 year ago
0
Multimappers flags. What is the best way to handle them?
#112
emattei
opened
1 year ago
0
Pass the --soloFeatures in input
#111
emattei
closed
1 year ago
1
Gene names
#110
mei-knudson
closed
1 year ago
0
Gene names
#109
mei-knudson
closed
1 year ago
0
no way to force exit jupyter nb execution via papermill
#108
sidwekhande
closed
1 year ago
2
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