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c-BIG
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NPM-sample-qc
reference implementation of GA4GH WGS Quality Control Standards
https://c-big.github.io/NPM-sample-qc
MIT License
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Feature/rework aln variant metrics json
#130
justinjj24
opened
3 weeks ago
0
test run picard multithreading - feature/picardcollectwgsmetrics-multithread
#129
justinjj24
closed
3 months ago
1
Feature/vcf qc implementation
#128
justinjj24
opened
5 months ago
0
Release/0.12.0
#127
mhebrard
closed
6 months ago
0
Pre-Release/0.12.0
#126
mhebrard
closed
6 months ago
0
Feature/picardcollectwgsmetrics
#125
justinjj24
closed
6 months ago
0
Feature/definition picardcollectwgsmetrics
#124
justinjj24
closed
6 months ago
0
multiqc combined compile_metrics process per sample
#123
justinjj24
closed
6 months ago
0
Decouple pipeline version to docker based version
#122
justinjj24
closed
9 months ago
0
Release 0.11.0
#121
mhebrard
closed
11 months ago
0
pre-release/0.11.0
#120
mhebrard
closed
11 months ago
0
Feature/fix input config params
#119
mhebrard
closed
11 months ago
0
Feature/fix input config params
#118
justinjj24
closed
11 months ago
0
Release/0.10.4
#117
mhebrard
closed
1 year ago
0
pre-release/0.10.4
#116
mhebrard
closed
1 year ago
0
Develop
#115
justinjj24
closed
11 months ago
1
Feature/cram format multiqc fix
#114
justinjj24
closed
1 year ago
1
Release/0.10.3
#113
mhebrard
closed
1 year ago
0
pre-release/0.10.3
#112
mhebrard
closed
1 year ago
0
Feature/resources strategy
#111
justinjj24
closed
1 year ago
0
Develop to release v0.10.3
#110
justinjj24
closed
1 year ago
1
Feature/resources strategy
#109
justinjj24
closed
1 year ago
0
specifying errorStrategy in configs rather than in processes
#108
nicolas-bertin
closed
1 year ago
1
improving verifybamid2 resource consumption
#107
nicolas-bertin
closed
1 year ago
1
Release/0.10.2
#106
mhebrard
closed
1 year ago
0
pre-release/0.10.2
#105
mhebrard
closed
1 year ago
0
added tower.yml to test nftower report view option UI
#104
justinjj24
closed
1 year ago
0
Release/0.10.1
#103
mhebrard
closed
1 year ago
0
Feature/fix multisample json
#102
justinjj24
closed
1 year ago
0
update verifybamid output file name, nextflow verison use and workdir…
#101
justinjj24
closed
1 year ago
1
Release 0.10.0
#100
mhebrard
closed
1 year ago
0
Release v0.10.0
#99
mhebrard
closed
1 year ago
0
Update definition
#98
mhebrard
closed
1 year ago
0
Next version
#97
mhebrard
closed
1 year ago
0
Update docs
#96
mhebrard
closed
1 year ago
0
Update output_certified
#95
mhebrard
closed
1 year ago
0
Feature/gitignore
#94
justinjj24
closed
1 year ago
0
Feature/multisample input phasing
#93
justinjj24
closed
1 year ago
3
Added new metric insert size standard deviation
#92
justinjj24
closed
1 year ago
0
Updated metric mean insert size estimation using samtools stats
#91
justinjj24
closed
1 year ago
1
Added new metric cross_contamination_rate
#90
justinjj24
closed
1 year ago
4
Update docstring
#89
mhebrard
closed
1 year ago
0
Add metric to estimate cross contamination rate
#88
justinjj24
closed
1 year ago
2
ga4gh/quality-control-wgs metrics_definitions.md - Genome coverage uniformity
#87
justinjj24
closed
1 year ago
1
ga4gh/quality-control-wgs metrics_definitions.md - Mean insert size
#86
justinjj24
closed
1 year ago
2
ga4gh/quality-control-wgs metrics_definitions.md - Percent reads properly paired
#85
justinjj24
closed
1 year ago
2
ga4gh/quality-control-wgs metrics_definitions.md - Percent reads mapped
#84
justinjj24
closed
1 year ago
4
ga4gh/quality-control-wgs metrics_definitions.md - Percent autosomes covered ≥ 15 X
#83
justinjj24
closed
1 year ago
1
ga4gh/quality-control-wgs metrics_definitions.md - Mean autosome coverage
#82
justinjj24
closed
1 year ago
1
ga4gh/quality-control-wgs metrics_definitions.md - Bases ≥ Q30
#81
justinjj24
closed
1 year ago
1
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