cafferychen777 ggpicrust2 issues

cafferychen777 / ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier

https://cafferychen777.github.io/ggpicrust2/

MIT License

102 stars 11 forks source link

issues

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pathway_heatmap can't extract columns past the end

#118 luigallucci opened 1 week ago
5
pathway_errorbar error

#117 DeniRibicic opened 3 weeks ago
7
# Perform pathway DAA using ALDEx2 method not working with example dataset

#116 JayalalKJ opened 1 month ago
1
pathway_annotation error "An error occurred. Retrying......"

#115 jw0531jung opened 1 month ago
3
Error in switch(file_format, .txt = abundance <- readr::read_delim(file, : EXPR must be a length 1 vector**

#112 bplet01 opened 1 month ago
2
Error pathway_errorbar "`$<-.data.frame`(`*tmp*`, "group", value = c(2L, 2L, 2L, 2L, : replacement has 20 rows, data has 1"

#111 raqxavier opened 3 months ago
2
Is this package compatible with other ggplot functions?

#110 chung-wingko opened 3 months ago
1
pathway_errorbar no longer working to graph data

#109 AbbiHern opened 3 months ago
1
pathway_pca

#108 raqxavier opened 3 months ago
4
Help needed using sample dada Math.factor ‘round’ not meaningful for factors

#107 jrhaulung opened 3 months ago
2
All my pathway results are NA

#106 Elixir0822 opened 5 months ago
0
The 'method' column in the 'daa_results_df' data frame contains more than one method.

#105 freemutation opened 6 months ago
2
curl_fetch_memory

#104 mccannpeter opened 6 months ago
4
How to obtain log-fold change values?

#103 andrewd789 closed 6 months ago
3
undefined columns selected and ‘round’ not meaningful for factors

#102 antonkratz opened 6 months ago
3
Error in `guide_transform()`: ! <Guide> classes have been rewritten as <ggproto> classes.

#101 antonkratz opened 6 months ago
3
error with MicrobiomeStat

#100 saassli21 opened 6 months ago
5
Error in `plot_theme()`: ! The `legend.text.align` theme element is not defined in the element hierarchy.

#98 lananh-ngn closed 6 months ago
2
Error in ggpicrust2 (There are no statistically significant biomarkers in the dataset)

#96 erda712 opened 7 months ago
4
Issue with pathway_errorbar : "The `legend.text.align` theme element is not defined in the element hierarchy."

#94 scilexenko closed 6 months ago
6
Installation issues with Rfast

#93 camcecc opened 7 months ago
2
add a title to errorbar and heatmap

#92 SueFletcher opened 7 months ago
9
Error from pathway_errorbar

#91 lingvv opened 7 months ago
1
pathway_heatmap cannot reorder

#90 gaimingle10 opened 7 months ago
1
pathway_daa()

#89 manijehmahdavi opened 8 months ago
1
Question about filtering features and groups

#88 pig-raffles opened 8 months ago
7
pathway_errorbar() : The 'method' column in the 'daa_results_df' data frame contains more than one method. Please filter it to contain only one method.

#86 IloveUKarna opened 8 months ago
3
Add website to DESCRIPTION

#85 olivroy closed 8 months ago
0
Issue plotting LinDA results as heatmap when ko_to_kegg = FALSE

#84 BiggusDickus666 closed 8 months ago
4
How to model for mixed effects?

#82 otaviolovison opened 9 months ago
1
ggpicrust on ITS : Error in `$<-.data.frame`(`*tmp*`, "description", value = character(0)) : le tableau de remplacement a 0 lignes, le tableau remplacé en a 1

#81 SueFletcher opened 9 months ago
5
Using ggpicrust2 for more than 2 groups.

#80 lcamVz closed 9 months ago
1
Stratified data

#79 BiggusDickus666 opened 9 months ago
2
Error in if (dispersion == 1) "LRT" else "scaled dev." : missing value where TRUE/FALSE needed

#78 Selucote8223 opened 10 months ago
6
PICRUSt2 tsv file is unformatted/not recognized when opened in ggpicrust2

#76 PaulaEterovick opened 10 months ago
2
"Error in dim[2] - index pathway_heatmap

#75 xinguo1236 opened 10 months ago
1
pathway_errorbar nonspecific error

#74 AbbiHern opened 10 months ago
7
The 'group1' or 'group2' column in the 'daa_results_df' data frame contains more than one group. Please filter each to contain only one group.

#72 saassli21 opened 10 months ago
6
Issue with MetaCyc pathway annotation

#71 etodd8 opened 10 months ago
0
Question about p-value(adjusted) in errorbar graph

#70 microbialkim opened 10 months ago
3
errobar interpretation

#69 saassli21 opened 10 months ago
5
'pathway_daa' function - Undefined colums selects

#68 gonzalofe opened 10 months ago
3
ALDex2 issue

#67 SRuwi opened 10 months ago
9
How to use plotly to generate interactive ggpicrust2 plots

#66 ScarlettPegany opened 11 months ago
8
issue while running pathway_errorbar()

#65 DaliBAmor opened 11 months ago
20
ggpicrust2(): Error in `metadata[, matching_columns]`:

#64 WillErickson1 opened 11 months ago
10
pathway_errorbar(): Editing the images generated using pathway error bar plot analysis

#63 Aristotle1992 opened 11 months ago
12
ggpicrust2(): incorrect number of dimensions

#62 luomeng277 opened 11 months ago
1
ggpicrust2 input file

#60 DaliBAmor closed 11 months ago
3
pathway_daa(): Error in metadata[, matching_columns]: ! Can't subset columns with matching_columns. ✖ Subscript matching_columns can't contain missing values. ✖ It has a missing value at location 1.

#58 GeoffreyOlweny opened 1 year ago
6