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calico
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scnym
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
https://scnym.research.calicolabs.com
Apache License 2.0
74
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RuntimeError: "indices should be either on cpu or on the same device as the indexed tensor" during scnym_api training with GPU
#33
viraj-rapolu
opened
2 weeks ago
2
Bump torch from 1.4.0 to 1.13.1
#32
dependabot[bot]
opened
9 months ago
0
Bump scipy from 1.4.1 to 1.10.0
#31
dependabot[bot]
opened
9 months ago
0
Bump numpy from 1.21.0 to 1.22.0
#30
dependabot[bot]
opened
9 months ago
0
Bump urllib3 from 1.26.6 to 1.26.18
#29
dependabot[bot]
opened
9 months ago
0
Bump requests from 2.26.0 to 2.31.0
#28
dependabot[bot]
opened
9 months ago
0
scNym Will Not Install
#27
Kwasi-Scientist
opened
1 year ago
5
No longer installs
#26
jlehrer1
opened
1 year ago
1
Unable to run the model successfully.
#25
speed090
opened
1 year ago
1
RuntimeError: CUDA error: CUBLAS_STATUS_EXECUTION_FAILED when calling `cublasSgemm`
#24
cartal
opened
1 year ago
4
Lack of support for sparse matrices makes scNym unusable for large datasets
#23
Wainberg
opened
1 year ago
0
change available human atlases to match those in cell_atlas.json
#22
milescsmith
closed
2 years ago
0
RuntimeError: NaN loss encountered in training
#21
nagendraKU
closed
2 years ago
2
Maintainence update - Model refactoring, debugging, unit test additions
#20
jacobkimmel
closed
2 years ago
0
install instructions dont work - scnym won't install with python 3.10
#19
njbernstein
closed
2 years ago
1
Add multitask learning, interpretability API, and domain adaptation without semi-supervision
#18
jacobkimmel
closed
2 years ago
0
Add edge-case testing for "jackpot" cells
#17
jacobkimmel
opened
3 years ago
0
Fix user supplied data split indices for supervised training
#16
jacobkimmel
closed
3 years ago
0
bugfix for dense matrices passed through the API
#15
jacobkimmel
closed
3 years ago
0
Increment version to 0.3.1
#14
jacobkimmel
closed
3 years ago
0
`domain_groupby` kwarg
#13
jacobkimmel
closed
3 years ago
1
domain_groupby argument missing
#12
MariekeL
closed
3 years ago
3
Human atlas not available in notebook?
#11
Gibbsdavidl
closed
3 years ago
4
Increment version in `setup.py`
#10
jacobkimmel
closed
3 years ago
0
Multi-domain training, integrated gradients and API updates
#9
jacobkimmel
closed
3 years ago
0
Annotating Seurat clusters
#8
timlai4
closed
3 years ago
4
Multiple categories
#7
chsher
closed
2 years ago
4
Issue 5
#6
jacobkimmel
closed
4 years ago
0
Problems with scnym installation using conda
#5
timlai4
closed
4 years ago
2
Add links to processed data
#4
jacobkimmel
closed
4 years ago
0
Semi-supervised and adversarial training, new API
#3
jacobkimmel
closed
4 years ago
0
scnym not working; Reason: image not found
#2
Brunox13
closed
4 years ago
2
segmentation fault after training finished
#1
hy395
closed
4 years ago
0