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campbio
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scruff
Single Cell RNA-seq UMI Filtering Facilitator
http://bioconductor.org/packages/scruff/
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Update Master
#188
zhewa
closed
3 months ago
0
Devel
#187
zhewa
closed
3 months ago
0
Refactor parallel processing using parallel and parallelly
#186
zhewa
closed
1 year ago
0
System hangs at alignment step
#185
parichitran
closed
2 years ago
2
Error in if (ncol(sce) != length(cellPerWell) & length(cellPerWell) != : argument is of length zero
#184
parichitran
closed
2 years ago
1
Release 3 14
#183
zhewa
closed
2 years ago
0
fix #181. remove "width" in .getGeneAnnotation
#182
zhewa
closed
2 years ago
0
QC table is not generated for single sample runs
#181
smkartik
closed
2 years ago
0
Ghvxx
#180
gogo0556
closed
2 years ago
1
Demultiplexing: unable to run in parallel
#179
BijnBau
closed
3 years ago
2
Allow use of GENCODE gtf file. Fix gene_type error.
#178
zhewa
closed
3 years ago
0
Allow use of GENCODE gtf file. Fix gene_type error.
#177
zhewa
closed
3 years ago
0
Release 3 12
#174
zhewa
closed
3 years ago
2
remove isSpike calls
#173
zhewa
closed
3 years ago
2
Bioconductor 3_11 release
#165
zhewa
closed
4 years ago
0
Release 3 11
#164
zhewa
closed
4 years ago
0
update docs fix warning
#163
zhewa
closed
4 years ago
0
fix file link in package does not exist and so has been treated as a …
#162
zhewa
closed
4 years ago
0
eval = FALSE for selected vignette chunks
#161
zhewa
closed
4 years ago
1
remove sample b1 in example to reduce build check time
#160
zhewa
closed
4 years ago
1
only include last 48 example cell barcodes
#159
zhewa
closed
4 years ago
0
reduce number of reads in example FASTQs to 2000
#158
zhewa
closed
4 years ago
0
sce to txt export function
#157
aleshchyk
closed
4 years ago
0
fix bioc timeout error
#156
zhewa
closed
4 years ago
4
Release 3 10
#155
zhewa
closed
4 years ago
0
fix vignette error
#154
zhewa
closed
4 years ago
0
fix .check_Ops_vector_arg_length bug
#153
zhewa
closed
4 years ago
1
fixed the output bug
#152
aleshchyk
closed
4 years ago
0
fix URL
#151
zhewa
closed
4 years ago
0
Add doubletDetection algorithms
#150
ykoga07
closed
4 years ago
2
Upgrade
#149
zhewa
closed
4 years ago
4
scrublet doublet detection
#148
shruthibandyadka
closed
4 years ago
3
EmptyDrops wrapper and unfiltered data example
#147
aleshchyk
closed
4 years ago
2
Adding multiple doublet/droplet detection functions
#146
ykoga07
closed
4 years ago
0
runDropletUtilsEmptyDrops
#145
aleshchyk
closed
4 years ago
0
add importBUStools
#144
zhewa
closed
4 years ago
1
add importSTARsolo
#143
zhewa
closed
4 years ago
2
Release 3 9
#142
zhewa
closed
4 years ago
0
version bump
#141
zhewa
closed
4 years ago
0
fix an error in tenxBamqc for chemistries other than v2
#140
zhewa
closed
4 years ago
0
Upgrade
#139
zhewa
closed
4 years ago
2
Upgrade
#138
zhewa
closed
4 years ago
0
Release 3 9
#137
zhewa
closed
4 years ago
0
cyclocomp_linter(complexity_limit = 40)
#136
zhewa
closed
4 years ago
0
version bump
#135
zhewa
closed
4 years ago
0
version bump
#134
zhewa
closed
4 years ago
0
Release 3 9
#133
zhewa
closed
4 years ago
0
update vignette for explicit real-data file paths assignments
#132
zhewa
closed
4 years ago
0
Check the validity of input cell barcode (validCb)
#131
zhewa
closed
4 years ago
2
Release 3 9
#130
zhewa
closed
4 years ago
2
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