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cancerit
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BRASS
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
GNU Affero General Public License v3.0
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Added a script to process UCSC centro/telo data for input to BRASS
#70
edawson
closed
5 years ago
2
Centromere/telomere file doesn't agree with example
#69
edawson
closed
5 years ago
2
C++11 compatibility fix
#68
jmarshall
closed
6 years ago
0
Implement_group error
#67
BastienNguyen
closed
6 years ago
6
Error in get_abs_bkpts_from_clipped_reads.pl
#66
hfl112
closed
5 years ago
6
get_rg_cns.R fails when sample does not have any reads in the segment
#65
ameynert
closed
5 years ago
1
use original Copynumber package
#64
sb43
closed
5 years ago
1
Feature/cleanup
#63
keiranmraine
closed
6 years ago
0
"keys on reference" warning prevents installation
#62
ikirker
closed
6 years ago
2
libInstall.R - needs updating if sticking with R3.1.3
#61
keiranmraine
closed
7 years ago
1
Unstable results - multiple possible normal panel intersections
#60
keiranmraine
closed
7 years ago
1
Feature/mod np chr
#59
sb43
closed
7 years ago
1
Revert "Feature/chr agnostic"
#58
keiranmraine
closed
7 years ago
0
Feature/chr agnostic
#57
sb43
closed
7 years ago
0
Feature/skip cn filter
#56
sb43
closed
7 years ago
1
Add missing <ostream> inclusion
#55
jmarshall
closed
7 years ago
0
Homozygous deletion no detected by BRASS
#54
yuranymoreno
closed
6 years ago
2
Help needed, velvet jobs being killed due to exonerate error
#53
Hbm3085
closed
4 years ago
3
CN filtering locked to hg19
#52
keiranmraine
closed
7 years ago
2
Very quiet data causes errors
#51
keiranmraine
closed
7 years ago
1
header of bedpe, normal panel sample numbering
#50
keiranmraine
closed
7 years ago
1
Remove dep on old bedGraphToBigwig use the one in cgpBigWig (bg2bw)
#49
keiranmraine
closed
7 years ago
1
Feature/speed up brm gen
#48
keiranmraine
closed
7 years ago
0
Request: Docker installation file for distribution
#47
evanbiederstedt
closed
7 years ago
1
Error installing BRASS-c++ on a clean Ubuntu Xenial machine
#46
brainstorm
closed
6 years ago
2
error in normal contamination step
#45
sb43
closed
7 years ago
11
Visualising SV vcfs + Calling Fusions.
#44
mortunco
closed
7 years ago
1
NormalContamination should be 'rho' in cmd options
#43
keiranmraine
closed
7 years ago
0
Values for optional field not being handled
#42
keiranmraine
closed
7 years ago
5
ssearch36 dependancy not documented or installed
#41
keiranmraine
closed
8 years ago
0
match_rg_patterns_to_library.pl could not pass the compilation
#40
mailllonely
closed
8 years ago
5
metropolis_hastings_inversions.R - fails on some R installs
#39
keiranmraine
closed
8 years ago
0
Feature/cn to flag
#38
keiranmraine
closed
8 years ago
0
get_rg_cns.R - tramples data if working on same input in parallel
#37
keiranmraine
closed
8 years ago
1
building 'brass/c++' on Mac OS
#36
nvolkova
closed
7 years ago
1
brass (c++): building failed, rearrgroup.cpp issues
#35
nvolkova
closed
8 years ago
0
Feature/species agnostic r
#34
keiranmraine
closed
8 years ago
0
Return to species agnostic state
#33
keiranmraine
closed
8 years ago
1
bottle-necks: investigate
#32
keiranmraine
closed
7 years ago
0
metropolis_hastings_inversions.R - output in odd location when '.' in path
#31
keiranmraine
closed
8 years ago
1
Checks for failed pipelines cause side-effect for data that filters to nothing
#30
keiranmraine
closed
8 years ago
0
brass.pl cleanup step - ascat files
#29
keiranmraine
closed
8 years ago
0
Unreported Blat Dependency
#28
jwhsanger
closed
8 years ago
1
Merging of assembled and unassembled vcf data incomplete
#27
keiranmraine
closed
8 years ago
0
brass.pl - output option requires full path
#26
keiranmraine
closed
8 years ago
0
pstreams/pstream.h: No such file or directory
#25
komalsrathi
closed
7 years ago
9
brass.pl ... -filter: not really optional
#24
keiranmraine
closed
8 years ago
1
Feature/expanded filtering from yilong
#23
keiranmraine
closed
8 years ago
0
Feature/core filter fixes
#22
keiranmraine
closed
8 years ago
0
Feature/optional cleanup
#21
keiranmraine
closed
9 years ago
0
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