carolzhou multiPhATE issues

carolzhou / multiPhATE

Throughput PhATE processing of draft or finished phage genomes

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issues

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TypeError: cannot use a string pattern on a bytes-like object while running blast

#22 ShailNair closed 3 years ago
5
CGC may not be genome specific

#21 jeffkimbrel closed 4 years ago
0
Added multithreading

#20 jeffkimbrel closed 4 years ago
1
need to modify getDBs.py ?

#19 carolzhou closed 3 years ago
3
Problem with getDBs.py and RefSeq and Swissprot file formats

#18 pinetr33z closed 3 years ago
7
Error while configuring annotation

#17 outbig closed 4 years ago
3
Issue with Phanotate: Output Files Empty/Missing

#16 sgsutcliffe closed 4 years ago
2
default parameters seem to persist over user specified ones for blastn

#15 Calvinblue closed 4 years ago
2
Last protein annotations missing

#14 bognabognabogna closed 4 years ago
3
GFF3 format doesn't seem right

#13 Calvinblue closed 4 years ago
3
Question: the output format in the supplementary

#12 alimayy closed 4 years ago
2
CGC_parser.py -- SyntaxWarning: 'str' object is not callable; perhaps you missed a comma?

#11 asttra closed 4 years ago
1
hmm search results not included in phate_sequenceAnnotation_main.gff

#10 thr44pw00d closed 4 years ago
4
syntax error on sample config

#9 bognabognabogna closed 5 years ago
5
GFF3 files are not GFF3 format

#8 JessF298 closed 5 years ago
2
Errors when running the sample.multiPhate.config file

#7 sean-bam closed 5 years ago
2
Append "/" to user defined blast file path

#6 jeffkimbrel closed 5 years ago
0
xml.etree.ElementTree.ParseError: no element found and Unrecognized database: refseqGene

#5 dwightkuo closed 4 years ago
5
Update README.md

#4 jeffkimbrel closed 4 years ago
0
check user's input path to blast+

#3 carolzhou closed 5 years ago
1
formatting print output in Py3.7 needs adjustment in final report

#2 carolzhou closed 4 years ago
1
Problem with compiling fastpath?

#1 carolzhou closed 5 years ago
0