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BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
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Silence -Wbitwise-instead-of-logical
#284
alanocallaghan
opened
3 months ago
0
Na.rm option
#283
alanocallaghan
closed
6 months ago
1
Na.rm option
#282
alanocallaghan
closed
6 months ago
0
Summary arg order
#281
alanocallaghan
closed
8 months ago
4
Add data input check to ensure expression counts are integers
#280
catavallejos
opened
11 months ago
1
comparing single cell and single nuclei datasets
#279
binyaminZ
opened
1 year ago
3
use a custom docker image for GHA
#278
alanocallaghan
closed
1 year ago
0
Dockerfile
#277
alanocallaghan
closed
1 year ago
0
bug fix BASiCS_DiagPlot
#276
catavallejos
closed
1 year ago
1
Bug in BASiCS_DiagPlot (HLine)
#275
catavallejos
closed
1 year ago
2
github actions
#274
alanocallaghan
closed
1 year ago
1
Snapshot tests
#273
alanocallaghan
closed
1 year ago
0
Edit `Summary` so that merged tables can be provided
#272
catavallejos
opened
1 year ago
0
Add horizontal reference lines to `BASiCS_DiagPlot` as default?
#271
catavallejos
closed
1 year ago
1
Spike in calc, lines on diag plots
#270
alanocallaghan
closed
1 year ago
0
Rhat
#269
alanocallaghan
closed
1 year ago
1
Try to fix GHA version
#268
alanocallaghan
closed
1 year ago
0
Apply offset correction to nu
#267
alanocallaghan
closed
1 year ago
0
ggplot aes_string deprecation
#266
alanocallaghan
closed
1 year ago
0
HVG and LVG tables have mu values duplicated in the delta column
#265
binyaminZ
closed
1 year ago
2
BASiCS_DenoisedCounts requires no further data normalisation?
#264
binyaminZ
opened
2 years ago
7
Add logit scale option to VolcanoPlot
#263
alanocallaghan
closed
2 years ago
0
v2.9.5 Resolve #243
#244
alanocallaghan
closed
2 years ago
0
Subset does not respect order
#243
alanocallaghan
closed
2 years ago
0
ESS estimator choice
#242
alanocallaghan
closed
1 year ago
1
logit transform volcano plots?
#241
alanocallaghan
closed
1 year ago
3
Split variance decomp plot
#240
alanocallaghan
closed
2 years ago
0
Parallel tests
#239
alanocallaghan
closed
2 years ago
4
adding spike-in data with SingleCellExperiment
#238
binyaminZ
closed
2 years ago
6
Intuition for noise parameter
#237
binyaminZ
opened
2 years ago
5
very rough draft multi-chain code
#236
alanocallaghan
closed
6 months ago
0
Theta doesn't converge
#235
binyaminZ
opened
2 years ago
10
BASiCS_TestDE after BASiCS_Filter - different amount of genes
#234
binyaminZ
closed
2 years ago
7
Processing raw data with CellBender prior to BASiCS analysis
#233
binyaminZ
closed
2 years ago
1
Understanding the resulting table of the differential variability test for residual over-dispersion
#232
SaraMonts
closed
2 years ago
5
Add option to fix nu when nospikes
#231
alanocallaghan
closed
2 years ago
0
Spacing in "EFDR = " Message
#230
alanocallaghan
closed
3 years ago
0
Differential varibility test when the residual over-dispersion calculated for the two groups toghather.
#229
almog5690
closed
1 year ago
1
Modulo operation in updates.h
#228
lilythepooh
closed
3 years ago
1
Init fails if any s0 is exactly zero
#227
alanocallaghan
closed
3 years ago
3
v2.3.2, no error for single batch
#226
alanocallaghan
closed
3 years ago
3
v2.2.3, no error for single batch
#225
alanocallaghan
closed
3 years ago
8
Error when using gamma for delta prior with spiked-in data
#224
lilythepooh
closed
3 years ago
6
Error produced from newBASiCS_Data: 'SpikeInput' row order does not match 'altExp'.
#223
lilythepooh
closed
3 years ago
4
Component missing in log_aux in Metropolis-Hastings?
#222
lilythepooh
closed
3 years ago
9
Improve error documentation in `BASiCS_PlotVG`
#221
catavallejos
opened
3 years ago
0
BASiCS_PlotVG not working in Chain data from
#220
ilibarra
closed
3 years ago
3
Fix scaling eb
#219
catavallejos
closed
3 years ago
0
Fix scaling of phi in line with empirical bayes approach
#218
alanocallaghan
closed
3 years ago
2
Parameter values used for GRBF functions?
#217
lilythepooh
closed
3 years ago
3
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