issues
search
ccagc
/
QDNAseq
QDNAseq package for Bioconductor
47
stars
27
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
poolRuns() error, invalid 'row.names' length
#130
jppmatos
opened
1 month ago
0
Next release
#129
HenrikBengtsson
closed
2 months ago
0
Blacklisted regions in applyFilter function without providing a bed file
#128
alexvasilikop
opened
3 months ago
0
Genome build hg38
#127
henryone0910
opened
5 months ago
0
Genome for mm39
#126
tashaann
opened
5 months ago
0
T2T genome support
#125
liuyang2006
opened
5 months ago
0
poolRuns() error or misapplication
#124
jppmatos
closed
4 months ago
7
R CMD check: Sporadic test errors; Error in diff2(x, differences = diff) : names() applied to a non-vector
#123
HenrikBengtsson
opened
8 months ago
3
Is there a way to hack QDNAseq plot methods to plot a point on the log2 ratio plots?
#122
zetamui
opened
8 months ago
1
Output VCF is not valid due to symbolic allele used as reference allele
#121
vlshesketh
opened
9 months ago
5
END INFO sub-field not documented in VCF Header
#120
cjw85
closed
2 months ago
3
Marmoset bin annotation creation challenge
#119
kojimak324
opened
10 months ago
0
Downloading 1000 Genomes samples is inactive
#118
kojimak324
opened
10 months ago
0
Extracting reads from bam file using binReadCounts takes too long
#117
Urja25
opened
1 year ago
2
How can I merge binReadCounts results?
#116
JYLeeBioinfo
opened
1 year ago
0
Patch 1 - user defined segment led
#115
RodrigoGM
opened
1 year ago
0
exportBins to seg/vcf doesn't contain all calls
#114
helaersr
opened
1 year ago
0
exportBins
#113
lightowlers
closed
2 months ago
1
error with poolRuns
#112
jpoell
closed
2 months ago
7
QDNAseq 1st time issues
#111
RMParkes
opened
1 year ago
0
Directly loading counts matrix
#110
shashwatsahay
opened
2 years ago
0
CODE: if() conditions comparing class() to string
#109
HenrikBengtsson
closed
2 years ago
0
Export Noise Plot data
#108
hannesbecher
opened
2 years ago
0
Export segements *and* calls to same BED file
#107
hannesbecher
opened
2 years ago
0
Prevent data.frames from turning into vectors
#106
ilarischeinin
opened
2 years ago
1
Error in e2[[j]]: subscript out of bounds
#105
RodrigoGM
opened
2 years ago
1
Running QDNAseq on WES data
#104
palakpatel09
opened
2 years ago
1
adjust the width/height of the CNV plot
#103
asaki1986
opened
2 years ago
0
exportBins to seg/vcf when one or zero CNV are called
#102
helaersr
opened
2 years ago
9
WISH: Update binReadCounts() to read in chunks by default
#101
HenrikBengtsson
opened
2 years ago
0
'Realloc' could not re-allocate memory
#100
helaersr
closed
2 years ago
7
error on calculateBlacklist
#99
briverog
opened
2 years ago
0
SPEEDUP: Use useNames=FALSE for all matrixStats calls
#98
HenrikBengtsson
closed
2 years ago
1
CLEANUP: Move 'future' to Suggests
#97
HenrikBengtsson
closed
2 years ago
1
Reproducible results?
#96
sxv
closed
3 years ago
3
BUG: exportBins() corrupts options 'scipen' on exit
#95
HenrikBengtsson
closed
3 years ago
0
Make exportBins() return pathnames of files written
#94
HenrikBengtsson
closed
3 years ago
0
BUG: `exportBins()` with `format = "seg"` or `format = "vcf"` does not respect argument `file`
#93
HenrikBengtsson
closed
3 years ago
1
Recycling array of length 1 in vector-array arithmetic is deprecated. Use c() or as.vector() instead.
#92
sxv
closed
3 years ago
3
Filter by region of chromosome
#91
HJeffery
opened
3 years ago
0
prevent rle combining across no copynumber change
#90
RoelKluin
closed
3 years ago
5
binReadCounts fails when setting chunksize
#89
SebastianHollizeck
closed
3 years ago
5
exportBins does log2 transform even on data formats it should not do
#88
lbeltrame
closed
3 years ago
2
exportBins errors
#87
mmterpstra
closed
3 years ago
10
ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [rbind]
#86
HenrikBengtsson
closed
3 years ago
0
ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [data.frame]
#85
HenrikBengtsson
closed
3 years ago
0
ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [read.table]
#84
HenrikBengtsson
closed
3 years ago
0
poolRuns colMeans2 error
#83
srinew
closed
4 years ago
1
compareToReference handles zeroes in reference poorly
#82
JocelynSP
opened
4 years ago
0
getBinAnnotations: Error in download.file
#81
ilarischeinin
closed
3 years ago
0
Next