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ccdmb
/
predector
Effector prediction pipeline based on protein properties.
Apache License 2.0
11
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7
forks
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info singularity repo build
#96
KristinaGagalova
opened
1 month ago
3
phobius not found
#95
vappiah
opened
3 months ago
3
New subversion of signalP 6.0 (g -> h), new version of deeploc (1.0 -> 2.0), difference in phobius (.tar.gz -> .tgz)
#94
markusHaferkamp
opened
4 months ago
2
Xboost BUG:
#93
MmasterT
opened
1 year ago
4
BUG: Signal4.1 segfaults using docker
#92
krostifangers
opened
1 year ago
7
Appoplast conflict
#91
Unalibun
closed
2 months ago
2
Dev
#90
darcyabjones
closed
2 years ago
0
Devel
#89
darcyabjones
closed
2 years ago
0
FEATURE REQUEST: dbcan 11
#88
darcyabjones
closed
2 years ago
1
BUG: Deepredeff output is empty
#87
darcyabjones
closed
2 years ago
8
FEATURE REQUEST: DeepLoc2 now available to download.
#86
darcyabjones
opened
2 years ago
0
Copy result files to results folder instead of linking
#85
IdoBar
closed
2 years ago
4
BUG: result files point to dead links when cleanup = true (or after running nextflow clean -f)
#84
IdoBar
closed
2 years ago
5
New release
#83
darcyabjones
closed
2 years ago
0
BUG: Names of all my proteins in tsv file are "."
#82
thdurand4
closed
2 years ago
8
BUG:Installation error ImportError: cannot import name 'Protocol'
#81
Unalibun
closed
2 years ago
3
Remove pinning of python to v3.6
#80
IdoBar
closed
2 years ago
1
Installation fails when testing DeepLoc
#79
IdoBar
closed
2 years ago
2
BUG:
#78
darcyabjones
closed
2 years ago
1
BUG: Mamba environment installation problem
#77
Hoberti
closed
2 years ago
5
1.2.5 tag
#76
darcyabjones
closed
2 years ago
0
BUG: Installer silently fails while registering signalp3
#75
darcyabjones
closed
2 years ago
1
Merging in changes for 1.2.3
#74
darcyabjones
closed
2 years ago
0
FEATURE REQUEST: Handle tar de-compression specification properly in conda register scripts
#73
darcyabjones
closed
2 years ago
1
BUG: Problem with "Registering source file signalp-3.0.Linux.tar.Z"
#70
a-velt
closed
2 years ago
4
BUG: Process `signalp_v6 (1)` terminated with an error exit status (1)
#69
tdymc
closed
2 years ago
5
BUG: Conda registration of signalp-4.1g.Linux.tar.gz & phobius101_linux.tar.gz
#68
tdymc
closed
2 years ago
3
Update to use SP 6.0c
#67
darcyabjones
closed
3 years ago
0
Update to work with SignalP 6.0b
#66
darcyabjones
closed
3 years ago
0
FEATURE REQUEST: Add a check to `install.sh` and conda register scripts to check for correct SignalP6 model
#65
darcyabjones
closed
3 years ago
3
build docker container failed
#64
zengtian2680
closed
2 years ago
6
FEATURE REQUEST: Diversify the test set a bit
#62
darcyabjones
closed
2 years ago
1
Update output.md
#61
fmobegi
closed
3 years ago
1
Update output.md
#60
fmobegi
closed
3 years ago
1
The ranking description of outputs should be a table.
#59
darcyabjones
closed
3 years ago
1
FEATURE REQUEST: Use GPUs for tasks that can utilise them.
#58
darcyabjones
opened
3 years ago
1
FEATURE REQUEST: Option to not run unnecessary slow tools
#56
darcyabjones
closed
2 years ago
1
BUG: SignalP4 segfaults using conda in WSL2
#55
darcyabjones
opened
3 years ago
0
BUG: Downloading Pfam-A fails. Connection time out.
#54
darcyabjones
closed
3 years ago
3
Deepsig fails with missing tensorflow module
#52
fmobegi
closed
2 years ago
12
SignalP6 threadlock
#51
fmobegi
closed
3 years ago
2
FEATURE REQUEST: Look into integrating post-processing information (e.g. Kex2)
#50
darcyabjones
closed
3 years ago
1
BUG: SignalP 6 too slow on Supercomputer.
#49
darcyabjones
closed
3 years ago
1
Dev
#48
darcyabjones
closed
3 years ago
0
FEATURE REQUEST: Please add Prediction result to the *-ranked.tsv
#47
xizhesun
closed
3 years ago
2
about the TM domain prediction
#46
xizhesun
opened
3 years ago
4
FEATURE REQUEST: secretomeP
#45
xizhesun
closed
3 years ago
3
BUG: effectorp_v2 error when Test the pipeline
#44
xizhesun
closed
3 years ago
11
FEATURE REQUEST: signalP6.0 support
#43
xizhesun
closed
3 years ago
5
effectorp3.0 support
#42
xizhesun
closed
3 years ago
4
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