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cggh
/
scikit-allel
A Python package for exploring and analysing genetic variation data
MIT License
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Request: Add Projection to PCA function
#323
Hjorvik
opened
4 years ago
2
adding copy button to hide Python prompt
#322
mufernando
closed
4 years ago
1
hide Python prompts from docs
#321
mufernando
opened
4 years ago
1
Interpreting Fst values
#320
standage
opened
4 years ago
4
Scheduled monthly dependency update for June
#319
pyup-bot
closed
4 years ago
1
p-value calculation feature request
#318
raqueldias
opened
4 years ago
1
Different results from locate_unlinked based on blen
#317
eric-czech
opened
4 years ago
0
Unexpected thrown error with allel.stats.ld.py.locate_unlinked()
#316
theomeb
opened
4 years ago
5
'variants/numalt' identical for all samples even though GT different
#315
tomwells-oxf
closed
4 years ago
2
Scheduled monthly dependency update for May
#314
pyup-bot
closed
4 years ago
0
altlen shape differs depending on fields parameter for read_vcf
#313
podpearson
opened
4 years ago
1
Converting genotype array to allel count encoding
#312
ghost
closed
4 years ago
4
Scheduled monthly dependency update for April
#311
pyup-bot
closed
4 years ago
0
Issues accessing data archive
#310
RenzoTale88
opened
4 years ago
1
RuntimeWarning in Weir & Cockerham Fst
#309
alimanfoo
opened
4 years ago
0
LD r greater than 1, then fixes if I rerun it
#308
raqueldias
opened
4 years ago
3
allel.pca should throw more informative error when invariant rows are passed
#307
schimar
opened
4 years ago
4
hdf5 to vcf
#306
neobernad
opened
4 years ago
1
Scheduled monthly dependency update for March
#305
pyup-bot
closed
4 years ago
1
High multi-allelic variants
#304
shubhamsaini
closed
4 years ago
3
Selecting a specific chromosome in a multi chromosome H5 file
#303
neobernad
closed
4 years ago
1
test failed related to terminal width
#302
yangmqglobe
opened
4 years ago
5
Scheduled monthly dependency update for February
#301
pyup-bot
closed
4 years ago
1
Adressing is_accessible problem in roh_mhmm, issue #296
#300
olavurmortensen
closed
4 years ago
5
Write from Zarr to vcf
#299
giang-nghg
opened
4 years ago
3
vcf_to_dataframe not able to extract columns that read_vcf method can
#298
philt31
opened
4 years ago
6
implement tabix region query natively in python
#297
yangmqglobe
opened
4 years ago
18
Error with default roh_mhmm() parameters
#296
olavurmortensen
opened
4 years ago
5
Not working
#295
sagarendluri
closed
4 years ago
8
added warning messages if positions are being marked as inaccessible
#294
mufernando
closed
4 years ago
35
Scheduled monthly dependency update for November
#293
pyup-bot
closed
4 years ago
1
vcf to hdf5 tabix warning
#292
Homap
closed
4 years ago
3
Whl support
#291
Rubyj
opened
4 years ago
1
Scheduled monthly dependency update for October
#290
pyup-bot
closed
4 years ago
1
Scheduled monthly dependency update for September
#289
pyup-bot
closed
4 years ago
1
Cython implementations for to_allele_counts
#288
timothymillar
closed
4 years ago
10
Suggestion to improve handling/io of mixed ploidy genotypes
#287
timothymillar
opened
5 years ago
5
vcf_to_npz vcf INFO warning
#286
cclarkson
opened
5 years ago
0
Error. nthreads cannot be larger than environment variable "NUMEXPR_MAX_THREADS"
#285
ddjukic
opened
5 years ago
9
Why not try to find the exits .tbi file but run tabix again?
#284
yangmqglobe
opened
5 years ago
12
If FORMAT header not present, parse from FORMAT column
#283
mbhall88
closed
5 years ago
3
Scheduled monthly dependency update for August
#282
pyup-bot
closed
5 years ago
1
Add 3 functions to simulate genotypes/allele counts for quick protyping
#281
hardingnj
opened
5 years ago
2
Error in allel.VariantChunkedTable on hdf5
#280
Homap
closed
5 years ago
4
gametic heterozygosity_observed
#279
timothymillar
opened
5 years ago
3
joining genotype arrays
#278
mufernando
closed
5 years ago
4
Use gametic heterozygosity for heterozygosity_observed calculation
#277
timothymillar
opened
5 years ago
7
`sequence_diversity` does not mask `ac` when `is_accessible` provided
#276
travc
closed
4 years ago
2
Fix for floating point bug in heterozygosity_expected #274
#275
timothymillar
opened
5 years ago
1
Floating point bug in heterozygosity_expected resulting in nans
#274
timothymillar
opened
5 years ago
1
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