cggh scikit-allel issues

cggh / scikit-allel

A Python package for exploring and analysing genetic variation data

MIT License

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issues

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Haplotype data

#367 pengyan19 opened 2 years ago
0
Added note to refer users to sgkit

#366 jeromekelleher closed 2 years ago
2
Scheduled monthly dependency update for August

#365 pyup-bot closed 2 years ago
1
Scheduled monthly dependency update for July

#364 pyup-bot closed 3 years ago
1
windowing: weird(?) behavior with the last window

#363 mufernando opened 3 years ago
4
Scheduled monthly dependency update for June

#362 pyup-bot closed 3 years ago
1
Maintenance: use github actions; purge bcolz

#361 alimanfoo closed 3 years ago
0
Scheduled monthly dependency update for May

#360 pyup-bot closed 3 years ago
0
FILTER_PASS when FILTER has '.'

#359 joshfactorial opened 3 years ago
0
Scheduled monthly dependency update for April

#358 pyup-bot closed 3 years ago
1
From HaploytpeArray to Fasta

#357 raveancic closed 3 years ago
1
Calculating the sequence diversity between two variants returns a key error

#356 vsbuffalo opened 3 years ago
0
How to use query atrr of array

#355 KazegamiKuon opened 3 years ago
0
Drop Python 3.6 in CI; fix h5py and zarr compat issues

#354 alimanfoo closed 3 years ago
0
Variant filtering and compress() on example from VariantChunkedTable documentation leads to error

#353 vsbuffalo closed 3 years ago
3
Scheduled monthly dependency update for March

#352 pyup-bot closed 3 years ago
0
Unable to open object (object 'pcontig_000' doesn't exist)

#351 Ram-Nagar opened 3 years ago
0
Scheduled monthly dependency update for February

#350 pyup-bot closed 3 years ago
1
ALT fields with . + seq in vcf_to_dataframe are annotated as nan.

#349 gmgs-999 opened 3 years ago
0
Exporting genotype to a file

#348 vappiah opened 3 years ago
3
Scheduled monthly dependency update for January

#347 pyup-bot closed 3 years ago
1
Scheduled monthly dependency update for December

#346 pyup-bot closed 3 years ago
1
optional dependency on bcolz

#345 Anthchirp opened 3 years ago
1
Scheduled monthly dependency update for November

#344 pyup-bot closed 3 years ago
1
draw LD heatmap?

#343 shenweima opened 3 years ago
0
Scheduled monthly dependency update for October

#342 pyup-bot closed 3 years ago
1
Negative GQ values after vcf_to_hdf5

#341 grlewis333 opened 3 years ago
3
vcf_to_csv -> not recognizing FORMAT

#340 ayadlin opened 3 years ago
3
Scheduled monthly dependency update for September

#339 pyup-bot closed 3 years ago
1
Add check for gnw with shape[0] of 1 ref issue 337

#338 hardingnj opened 3 years ago
0
windowed_r_squared: IndexError for single-SNP windows

#337 pmonnahan opened 3 years ago
2
Fst input format

#336 NTNguyen13 opened 3 years ago
1
Heterozygosity Blue

#335 timothymillar opened 3 years ago
0
Scheduled monthly dependency update for August

#334 pyup-bot closed 3 years ago
1
Add a function for reading a fasta into a dict of numpy arrays

#333 andrewgwalker opened 4 years ago
0
Fixed Issue #271: Added pathlib.Path support for functions taking a filepath

#332 smbadiwe opened 4 years ago
0
FORMAT

#331 javadnoorb opened 4 years ago
2
v1.3.1 release

#330 alimanfoo closed 4 years ago
0
Python 3.8 compatibility

#329 alimanfoo closed 4 years ago
0
v1.3.0 release

#328 alimanfoo closed 4 years ago
2
Adressing is_accessible problem in roh_mhmm, issue #296

#327 hardingnj closed 4 years ago
5
Scheduled monthly dependency update for July

#326 pyup-bot closed 4 years ago
0
Bug: Getting negative, non-one values in vcf['calldata/DP'] and vcf[calldata/AD']

#325 cassiawag closed 4 years ago
3
diversity stats and fully missing sites

#324 mufernando opened 4 years ago
12
Request: Add Projection to PCA function

#323 Hjorvik opened 4 years ago
2
adding copy button to hide Python prompt

#322 mufernando closed 4 years ago
1
hide Python prompts from docs

#321 mufernando opened 4 years ago
1
Interpreting Fst values

#320 standage opened 4 years ago
4
Scheduled monthly dependency update for June

#319 pyup-bot closed 4 years ago
1
p-value calculation feature request

#318 raqueldias opened 4 years ago
1

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