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chapmanb
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cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
http://cloudbiolinux.org
MIT License
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Fixing non-zero exit status 141 in hg19
#315
mmoisse
closed
5 years ago
0
Fix/minor typos
#314
r6eve
closed
5 years ago
1
Add Conda packages Bismark and Trim Galore
#313
hackdna
closed
5 years ago
4
Issues with installing dbscSNV
#312
mmoisse
closed
5 years ago
7
Fix typo - issue #308
#311
mmoisse
closed
5 years ago
0
Make gnomad gnomes restartable
#310
mmoisse
closed
5 years ago
1
fixes issue 308
#309
naumenko-sa
closed
5 years ago
0
UNPACK_DIR: unbound variable
#308
mmoisse
closed
5 years ago
3
Add G2P datatarget to human genomes
#307
matthdsm
closed
5 years ago
0
updated clinvar
#306
naumenko-sa
closed
5 years ago
1
helper scripts to install gnomad genome for hg19 and hg38
#305
naumenko-sa
closed
5 years ago
1
dbNSFP v4.0a
#304
matthdsm
closed
5 years ago
14
correct merging for gnomad genome recipes
#303
naumenko-sa
closed
5 years ago
1
corrected vcf concatenation order, it should be chr1, chr2, ..., chr2…
#302
naumenko-sa
closed
5 years ago
1
fixes an issue in gnomad exome and genome for hg19 and hg38
#301
naumenko-sa
closed
5 years ago
1
fixed an issue in gnomad for hg19
#300
naumenko-sa
closed
5 years ago
0
Used bcftools annotate to remove INFO fields instead of vt rminfo,
#299
naumenko-sa
closed
5 years ago
1
gnomad_exome ggb randomly fails on chr1
#298
naumenko-sa
closed
5 years ago
5
fixed a bug
#297
naumenko-sa
closed
5 years ago
1
a peculiar bug in grch37 dbnsftp recipe
#296
naumenko-sa
closed
5 years ago
3
updated ggd recipies for grch37,hg19, and hg38 to use gnomad2.1
#295
naumenko-sa
closed
5 years ago
2
vep_96: bump requirement
#294
matthdsm
closed
5 years ago
2
mirbase GFF file not installed for mmu even if it is present
#293
lbeltrame
closed
3 years ago
2
Feature request: Update Drosophila genome build to support dm6
#292
mjsteinbaugh
closed
5 years ago
5
ggd recipe for gnomad sv database (vcf and bed) for grch37 - 500k SVs…
#291
naumenko-sa
closed
5 years ago
1
Failed to install due to broken link
#290
BoPeng
closed
3 years ago
5
Adds Topmed frequencies to grch37, hg38 and hg19.
#289
naumenko-sa
closed
5 years ago
1
fixes a bug
#288
naumenko-sa
closed
5 years ago
1
filters PASS variants before vt uniq
#287
naumenko-sa
closed
5 years ago
1
added vt uniq to remove duplicate variants,
#286
naumenko-sa
closed
5 years ago
1
makes sure that wget rather than vt is used to download gnomad.vcf.gz…
#285
naumenko-sa
closed
5 years ago
1
Fixes gnomad_exome.vcf.gz truncation issue for hg38 and grch37
#284
naumenko-sa
closed
5 years ago
1
Error while adding reference to the given genome to the base index file
#283
pprieto
closed
5 years ago
1
Quick fix for update_loc_file
#282
pprieto
closed
5 years ago
1
gnomad exome issue
#281
matthdsm
closed
5 years ago
5
Makes sure that gnomad genome and exome vcfs are normalized for hg19, hg38, and grch37
#280
naumenko-sa
closed
5 years ago
3
normalize gnomad exome and genome vcf for hg19, hg38, grch37
#279
naumenko-sa
closed
5 years ago
1
splicesites not available for hg19?
#278
lbeltrame
closed
3 years ago
1
VEP_95: updated conda requirement
#277
matthdsm
closed
5 years ago
3
added gnomad exome ggd recipe
#276
matthdsm
closed
6 years ago
2
Vep 94
#275
matthdsm
closed
6 years ago
1
added csi index where possible
#274
matthdsm
closed
5 years ago
1
Annotations update
#273
matthdsm
closed
6 years ago
1
bumped vep to v93
#272
matthdsm
closed
6 years ago
1
updated dbNSFP version
#271
matthdsm
closed
6 years ago
2
Typo: infrsatructure -> infrastructure
#270
hartzell
closed
6 years ago
1
GGD recipes, FTP > HTTP where available
#269
matthdsm
closed
6 years ago
1
GGD dbsnp: change FTP to HTTP
#268
matthdsm
closed
6 years ago
2
bumped vep version
#267
matthdsm
closed
6 years ago
1
gsort error when running recipe for hg38 gnomAD
#266
tkoomar
closed
6 years ago
10
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