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chapmanb
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cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
http://cloudbiolinux.org
MIT License
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create purecn mappability recipe
#365
naumenko-sa
closed
3 years ago
0
update purecn dependencies
#364
naumenko-sa
closed
3 years ago
0
Update gnomad.yaml
#363
pfpjs
closed
3 years ago
2
fix gnomad hg19 recipe
#362
naumenko-sa
closed
3 years ago
1
fix grch37 gnomad recipe
#361
naumenko-sa
closed
3 years ago
0
fix an issue when file is being moved across filesystems
#360
naumenko-sa
closed
3 years ago
0
hotfix
#359
naumenko-sa
closed
4 years ago
1
hotfix
#358
naumenko-sa
closed
4 years ago
0
fix to use ftp server instead of gdrive
#357
naumenko-sa
closed
4 years ago
0
use google drive download link
#356
naumenko-sa
closed
4 years ago
0
add af-gnomad resource for t-only mutect2 variant calling and purecn
#355
naumenko-sa
closed
4 years ago
0
Pin Samtools version to 1.7
#354
hackdna
closed
4 years ago
9
Fix typo in testing instructions
#353
hackdna
closed
4 years ago
0
Revert "pin biopython=1.76"
#352
naumenko-sa
closed
4 years ago
0
Bump ensembl vep pin
#351
matthdsm
closed
4 years ago
1
close #3187
#350
naumenko-sa
closed
4 years ago
0
tar -p option causes quota issues in case quota are enforced on group level
#349
vdejager
closed
4 years ago
3
add giab-NA24694, giab-NA24695 for GRCh37
#348
sam-ber
closed
4 years ago
0
add giab-NA24694, giab-NA24695 for hg38
#347
naumenko-sa
closed
4 years ago
0
add 3.6 env and purecn update
#346
naumenko-sa
closed
4 years ago
1
Add mirbase tag to the annotations of BDGP6
#345
DrHogart
closed
4 years ago
1
add support of miRNA data with BDGP6
#344
DrHogart
closed
4 years ago
2
add suport of miRNA data with BDGP6
#343
DrHogart
closed
4 years ago
0
add staden_io_lib to conda dependencies
#342
matthdsm
closed
4 years ago
1
clean environments
#341
matthdsm
closed
3 years ago
1
limit conda environments
#340
matthdsm
closed
2 years ago
1
Add bx-python package
#339
hackdna
closed
4 years ago
3
fixes duplicated records in gnomad_exome
#338
naumenko-sa
closed
4 years ago
1
update gnomad to v3
#337
naumenko-sa
closed
4 years ago
1
Matthdsm dbsnp 153
#336
naumenko-sa
closed
4 years ago
0
update gnomad hg38 resources.
#335
naumenko-sa
closed
4 years ago
0
Integrate additional GiaB samples for validation
#334
sam-ber
closed
4 years ago
1
bump dbsnp to v153
#333
matthdsm
closed
4 years ago
2
bump vep version
#332
matthdsm
closed
4 years ago
1
Revert "Skip mamba usage due to conflicts with conda 4.8"
#331
naumenko-sa
closed
4 years ago
1
require ldc >=1.13.0
#330
naumenko-sa
closed
4 years ago
1
Broad FTP login error is causing bcbio-nextgen data upgrade to fail
#329
mjsteinbaugh
closed
4 years ago
7
remove Exome-AZ_V2.bed - it has incorrect record
#328
naumenko-sa
closed
4 years ago
1
Bump paramiko from 1.7.7.1 to 2.0.9 in /deploy
#327
dependabot[bot]
closed
4 years ago
3
Bump vep to v98
#326
matthdsm
closed
4 years ago
2
filtered non-unique variants in hg38/gnomad_exome. using the single v…
#325
naumenko-sa
closed
4 years ago
1
Problems with centralized conda installation
#324
karl616
closed
4 years ago
2
Gnomad genome recipe fix
#323
naumenko-sa
closed
4 years ago
1
updated gnomad_exome recipes
#322
naumenko-sa
closed
5 years ago
1
added --clean
#321
lubinskibu
closed
5 years ago
4
updated gnomad exome for hg38 - much faster from gnomad google cloud
#320
naumenko-sa
closed
5 years ago
1
vep: bump version
#319
matthdsm
closed
5 years ago
1
bismark_indices.loc missing
#318
gcampanella
closed
5 years ago
2
Fix paths in Bismark genome preparation recipes
#317
gcampanella
closed
5 years ago
1
Add Bismark genome preparation for human genomes
#316
gcampanella
closed
5 years ago
1
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