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childmindresearch
/
bids2table
Efficiently index large-scale BIDS neuroimaging datasets and derivatives
https://childmindresearch.github.io/bids2table/
MIT License
13
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Improve identification of BIDS data files and sidecars
#38
clane9
opened
6 days ago
0
Add codespell support (config, workflow to detect/not fix) and make it fix few typos
#37
yarikoptic
opened
3 weeks ago
0
Incorrect identification of BIDS files
#36
clane9
opened
3 weeks ago
1
Add 'exclude' field
#35
e-kenneally
closed
3 weeks ago
0
Fetch BIDS information from schema
#34
nx10
closed
3 weeks ago
1
Make extracting sidecar metadata optional
#33
clane9
closed
2 months ago
2
Investigate os.scandir for initial file crawling
#32
nx10
closed
2 months ago
1
Column aliases
#31
nx10
opened
2 months ago
1
Detect non-BIDS folder structures early and abort
#30
nx10
closed
6 days ago
3
Fix non-deterministic BIDS table file order in `test_table`
#29
clane9
closed
2 months ago
1
`example/example.ipynb` fails due to `KeyError`
#28
maouw
closed
6 days ago
2
Parametrize and add correct test cases to fix #23 in test_table_files()
#27
maouw
closed
2 months ago
0
test_table_files fails because test case is incorrect
#26
maouw
closed
2 months ago
2
Simplify logging
#25
clane9
closed
4 months ago
0
[Bot] Auto update template
#24
nx10
closed
4 months ago
0
Update README
#23
clane9
closed
11 months ago
1
Add docs
#22
clane9
closed
11 months ago
1
Extracting more metadata
#21
clane9
opened
11 months ago
0
Skip derivatives indexing
#20
clane9
closed
6 days ago
1
Integer valued BIDS entities cast to floats
#19
clane9
opened
11 months ago
0
PyBIDS 1.0 API example
#18
effigies
opened
11 months ago
2
Higher-level API
#17
clane9
closed
11 months ago
1
Flatten columns, column renaming
#16
clane9
closed
11 months ago
1
Suggestion: By default stop inheritance when reaching root
#15
adelavega
closed
11 months ago
1
Add benchmarks
#14
clane9
closed
11 months ago
9
Fix handling of extra entities
#13
clane9
closed
11 months ago
1
Always use absolute path.
#12
ReinderVosDeWael
closed
11 months ago
1
Add version
#11
clane9
closed
1 year ago
0
Improve sidecar handling
#10
clane9
closed
1 year ago
1
Fix CI test coverage
#9
clane9
closed
1 year ago
1
Fix handling of null entities
#8
clane9
closed
1 year ago
0
Update pyproject.toml to find desired packages
#7
clane9
closed
1 year ago
0
Add filtering functionality to bids2table
#6
ReinderVosDeWael
closed
11 months ago
1
Add tests
#5
clane9
closed
1 year ago
1
Add support for using nifti library as image backend
#4
clane9
closed
1 year ago
0
Crawl BIDS dirs more efficiently
#3
clane9
closed
1 year ago
0
Refactor entities and update interfaces
#2
clane9
closed
1 year ago
0
Add CLI prototype
#1
nx10
closed
1 year ago
1