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chiulab
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surpi
SURPI
chiulab.ucsf.edu/surpi
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taxdump file from NCBI have been changed
#37
huangjingchuan12
opened
2 years ago
0
How to make surpi db for new NCBI accession2taxid files
#36
DooYal
opened
2 years ago
0
zifn
#35
advaitb
opened
4 years ago
0
problem with RAPSearch2
#34
MaryamZaheri
closed
4 years ago
0
Download databases
#33
110147
opened
6 years ago
4
fqextract
#32
ehenrion
closed
7 years ago
1
Edit distance in SAM header
#31
ropolomx
opened
7 years ago
0
Cropped reads larger than 75 bp
#30
ropolomx
opened
7 years ago
0
adapters
#29
bhykes1
opened
7 years ago
1
SNAP_FAST_db_dir database error running in comprehensive mode
#28
bhykes1
opened
7 years ago
2
Error taxonomy_lookup_embeded.pl
#27
guillaume-gricourt
opened
8 years ago
5
GI numbers have been deprecated from NCBI database
#26
raeece
opened
8 years ago
2
error: no such table: gi_taxid at taxonomy_lookup_embedded.pl line 119
#25
nooong
closed
8 years ago
0
Add dependencies and order them alphabetically.
#24
xihh87
opened
8 years ago
0
can surpi working on amplicon data?
#23
ylzheng
closed
8 years ago
2
regarding dropcache
#22
maojn
opened
8 years ago
0
surpi on CentOS 6?
#21
husenzhang
opened
8 years ago
1
SURPI failure: dependency on 'snap-dev'
#20
ghbore
opened
8 years ago
3
Old SNAP version doesn't work with large genomes
#19
dnieuw
opened
9 years ago
0
create_SURPI_data.sh stumbles on pigz
#18
dnieuw
closed
9 years ago
2
replaced Readme.txt with README.md
#17
zyxue
opened
9 years ago
0
|'s in SURPI output file names.
#16
philipmac
opened
9 years ago
0
AMI run returns no results for 200k reads containing viruses
#15
bede
closed
9 years ago
4
Fixed gi database query quoting
#14
jpfeil
closed
9 years ago
0
SURPI! Dockered: a first attempt
#13
snewhouse
opened
9 years ago
0
Various fixes for better compatibility and cleanups.
#12
yesimon
opened
9 years ago
0
Wrap Readme.txt to 80 chars.
#11
yesimon
opened
9 years ago
0
Repeated errors in "xa*.modheader.cutadapt.summary.log"
#10
wclee47
opened
9 years ago
0
Demultiplexing in coverage_generator_bp.sh
#9
donutbrew
opened
10 years ago
0
mlab.load depreciated (coveragePlot.py issue)
#8
donutbrew
closed
9 years ago
3
"Can not open the database file" for Comprehensive runs against NR database
#7
damurdock
closed
10 years ago
1
Log actual crop lengths
#6
damurdock
closed
10 years ago
0
snap can dump core and the error is not caught by SURPI.sh
#5
terrycojones
opened
10 years ago
2
Millions of repeated errors in reads.preprocess.log file
#4
terrycojones
closed
10 years ago
5
Allow user to select DB directory at command line
#3
damurdock
closed
10 years ago
3
Errors in SURPI.sh are now all written to stderr
#2
terrycojones
opened
10 years ago
0
FASTQ format warning printed to log file instead of to error file
#1
terrycojones
opened
10 years ago
0