choderalab ensembler-manuscripts issues

choderalab / ensembler-manuscripts

Manuscript for Ensembler v1

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Added marked-up proofs

#58 jchodera closed 8 years ago
0
Update README with pointer to code

#57 jchodera closed 8 years ago
0
Final PDF to EPS conversion for PLoS Comp Bio

#56 jchodera closed 8 years ago
0
More changes for PLoS's complete lack of technical production capabilities

#55 jchodera closed 8 years ago
1
Resubmitted revision

#54 jchodera closed 8 years ago
0
Final edits for revision

#53 jchodera closed 8 years ago
0
Cut a new release

#52 jchodera closed 8 years ago
1
Please take a final edits pass!

#51 jchodera closed 8 years ago
17
Accepted Danny edits (blue) to all edits (red) with minor changes

#50 jchodera closed 8 years ago
0
Show number of structures available for each target

#49 jchodera opened 8 years ago
4
Create new version of Fig. 8 (or additional panel) for a third kinase

#48 jchodera opened 8 years ago
7
Generate figure to show distribution of MolProbity scores

#47 jchodera opened 8 years ago
5
Address referee comments

#46 jchodera closed 8 years ago
3
Some extra plots of ensembler models

#45 sonyahanson opened 8 years ago
25
Added referee reports

#44 jchodera closed 8 years ago
0
Updated pre-submission inquiry.

#43 jchodera closed 9 years ago
0
Update bioRxiv version?

#42 jchodera closed 9 years ago
2
Timestep says "2 ps" instead of "2 fs"

#41 jchodera closed 9 years ago
1
Reminder to update Acknowledgments

#40 jchodera closed 8 years ago
0
Updated README.md with minor edits

#39 jchodera closed 9 years ago
0
Dataset to accompany manuscript

#38 danielparton opened 9 years ago
15
Cite Copernicus

#37 jchodera opened 9 years ago
2
TK targets data

#36 danielparton closed 9 years ago
1
Link API/CLI code mentioned in text to a specific Ensembler release.

#35 danielparton closed 9 years ago
2
Add list of TK UniProt identifiers and gene names

#34 danielparton closed 9 years ago
1
Make the commands used to generate the TK data available

#33 danielparton closed 9 years ago
1
Add links for Ensembler code and TK models at end of Introduction

#32 danielparton closed 9 years ago
2
Make TK models available

#31 danielparton closed 9 years ago
1
Some Manuscript Comments

#30 pgrinaway closed 9 years ago
7
Manuscript comments

#29 kyleabeauchamp closed 8 years ago
22
Further analysis of TK models

#28 danielparton opened 9 years ago
2
Document default parameters for implicit and explicit solvent refinement

#27 jchodera closed 9 years ago
1
Analysis of potential energies from implicit solvent MD refinement

#26 danielparton closed 9 years ago
3
Figure: distribution of remodeled loop lengths

#25 danielparton closed 9 years ago
4
splice variants?

#24 jchodera opened 9 years ago
0
Another edits pass

#23 jchodera closed 9 years ago
3
Another edits pass

#22 jchodera closed 9 years ago
1
Check figure, table and SI numbering schemes are correct

#21 danielparton closed 9 years ago
2
Residue numbering schemes

#20 danielparton closed 9 years ago
2
Use Oxford (serial) comma throughout

#19 jchodera closed 9 years ago
3
Fix font size issues in figures

#18 jchodera closed 9 years ago
1
subcaption is compatible with revtex

#17 jchodera closed 9 years ago
1
Edits pass

#16 jchodera closed 9 years ago
1
Plan for entering references

#15 jchodera closed 9 years ago
5
Lots of edits!

#14 jchodera closed 9 years ago
0
Edits pass through manuscript

#13 jchodera closed 9 years ago
2
Residue pair distances figure

#12 danielparton closed 9 years ago
27
Clustering Code

#11 kyleabeauchamp closed 9 years ago
0
Model superposition figure

#10 danielparton closed 9 years ago
21
Attrition rates data/figure

#9 danielparton closed 9 years ago
22