chop-dbhi varify issues

chop-dbhi / varify

Clinical DNA Sequencing Analysis and Data Warehouse

BSD 2-Clause "Simplified" License

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issues

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Add genome version to sample and variant resources

#397 naegelyd closed 9 years ago
1
Stats model required.

#396 hassanNS closed 9 years ago
6
Update Varify to support version 0.4.0 of vdw

#395 naegelyd closed 9 years ago
1
Create new Avocado metadata migration with null translators

#394 naegelyd opened 9 years ago
0
Removing last surviving references to CoffeeScript

#393 naegelyd closed 9 years ago
1
Fix errata in README.md

#392 monop opened 9 years ago
0
Fix case where sample modal sort direction was opposite of indicator

#391 naegelyd closed 9 years ago
1
Sample sort direction is opposite of indicator

#390 naegelyd closed 9 years ago
0
Add genome version to sample and variant resources

#389 bruth closed 9 years ago
3
Headless tests need to be reworked for latest version of varify

#388 hassanNS opened 9 years ago
1
Performance problem due to redundant queries

#387 murphyke opened 9 years ago
1
Set sample from context when absent in workspace

#386 naegelyd closed 9 years ago
1
Workspace doesn't refresh when navigated to from another page

#385 naegelyd closed 9 years ago
0
Embed a SolveBio variant-detail dashboard

#384 davecap closed 9 years ago
7
Wait until samples sync to set sample label in results workflow

#383 naegelyd closed 9 years ago
0
Limit cohort formatter to cohorts from projects user has permision for

#382 naegelyd closed 9 years ago
0
Update samplesInContext utility method to handle bare sample IDs

#381 naegelyd closed 9 years ago
0
Sample label shows "undefined" in results toolbar for single sample

#380 naegelyd closed 9 years ago
0
Fix issue where cohort popover lost scrolling on overflow

#379 naegelyd closed 9 years ago
0
Allow users to select multiple samples

#378 naegelyd closed 9 years ago
1
Cohort sample popover no longer has constrained height and scrolling

#377 naegelyd closed 9 years ago
0
Cohort formatter does not restrict cohort list when request user is present

#376 naegelyd closed 9 years ago
0
Add cancel button to sample modal

#375 naegelyd closed 9 years ago
0
Add multi-sample selection to the sample chooser modal

#374 naegelyd closed 9 years ago
0
Use explicit comparison when parsing result genes

#373 naegelyd closed 9 years ago
1
All gene symbols appear as "Unknown" in results table

#372 naegelyd closed 9 years ago
0
Add cancel button to sample selection modal

#371 naegelyd closed 9 years ago
0
Limit frequencies to cohorts in projects users have permissions on

#370 naegelyd closed 9 years ago
1
Restrict cohorts to those for projects user has access to

#369 naegelyd closed 9 years ago
0
Clarify in UI that frequencies are cohort frequencies and NOT genotype/allele freqs

#368 naegelyd closed 9 years ago
1
Move bench/ to vdw

#367 naegelyd closed 9 years ago
1
Add new SolveBio "Dashboard" to variant detail view

#366 davecap closed 9 years ago
11
Resource tests required

#365 hassanNS closed 9 years ago
0
Added resource test cases

#364 hassanNS closed 9 years ago
10
Provide local CSS when external CDN fails

#363 ryanjohara closed 10 years ago
5
Provide local CSS when external CDN fails

#362 ryanjohara closed 10 years ago
5
Don't hide loading overlay until variant data is returned

#361 naegelyd closed 10 years ago
2
Disable Alamut button if nothing is running on port 10000

#360 ryanjohara opened 10 years ago
0
Update Docs to include varify-data-warehouse and instructions of use.

#359 hassanNS closed 10 years ago
1
Loading indicator on results page is cleared before results are displayed

#358 naegelyd closed 10 years ago
0
Update templates and tests to comply with schema changes

#357 awenocur closed 9 years ago
0
Integrate JBrowse into Varify

#356 ryanjohara closed 9 years ago
12
Genotypes are shown as numbers instead of text

#355 hassanNS closed 10 years ago
1
handler issue while loading samples and using queue command

#354 hassanNS closed 10 years ago
2
Update varify to leverage varify-data-warehouse

#353 naegelyd closed 10 years ago
7
Add fallback code for libraries loaded via CDN

#352 naegelyd opened 10 years ago
1
Resolving Test Case Clashes

#351 awenocur closed 10 years ago
2
Add support for regions in gene sets

#350 naegelyd opened 10 years ago
1
Add support for result/variant sets

#349 naegelyd closed 10 years ago
8
Added create_db management command

#348 hassanNS closed 10 years ago
0