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chung-lab
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SCAFE
Single Cell Analysis of Five'Ends
MIT License
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demo output of calculateDirectionality reveals mis-classified directionality?
#34
mkarikom
opened
2 months ago
0
Fail to build with singularity
#33
Elena-TKO
opened
3 months ago
0
failed to run scRNA-seq demo data
#32
Guofeng527220
opened
4 months ago
0
How are gene promoter decisions made for unannotated promoters?
#31
sarahhp
opened
5 months ago
0
Remove Rscript version checks
#30
yxsee
opened
5 months ago
0
Getting starsolo paired end output to clear (preprocessing script attached)
#29
ktpolanski
opened
6 months ago
1
failed at running scafe.tool.sc.bam_to_ctss
#28
weitaiwu
closed
8 months ago
0
Failed at scafe.workflow.cm.aggregate line 536
#27
raunakkar
opened
9 months ago
0
Two very nearby clusters don't get merged, confusion ensues in `directionality`
#26
ktpolanski
opened
11 months ago
2
Reference handling in an automated, multi-sample container setting (with workarounds)
#25
ktpolanski
opened
1 year ago
0
Rscript is not installed properly.
#24
yxsee
opened
1 year ago
1
scafe.workflow.sc.solo Quitting: Auto detection of TS oligo failed. Average softclip length is ambiguous.
#23
marsa04
opened
1 year ago
2
using 10X references
#22
ktpolanski
opened
1 year ago
2
Illegal division by zero at scafe.tool.sc.bam_to_ctss
#21
xibarrasoria
closed
1 year ago
2
Error in scafe.tool.sc.bam_to_ctss "Use of uninitialized value in division"
#20
jaimemrb
closed
2 years ago
6
scafe not found when using singularity + docker image
#19
ccrobertson
closed
2 years ago
3
About scafe.workflow.cm.aggregate
#18
jiawei-zhong
closed
2 years ago
3
dropbox access failed
#17
marsa04
closed
2 years ago
3
About "mouse ENCODE CREs"
#16
jiawei-zhong
closed
2 years ago
4
Died scafe.workflow.sc.solo line 556
#15
marsa04
closed
2 years ago
2
non-10x compatibility
#14
ysun-8
closed
2 years ago
1
Results of count not found. Quitting
#13
houruiyan
closed
2 years ago
1
The error when running the scafe.workflow.sc.pool
#12
houruiyan
closed
2 years ago
1
genome does not have chrom_name_path
#11
houruiyan
closed
2 years ago
2
SC5P-PE and SC5P-R2
#10
p4rkerw
closed
2 years ago
1
111
#9
pengjin0210
closed
2 years ago
0
pooling of multiple samples
#8
baigal628
closed
2 years ago
1
bam_to_ctss throws error with demo data
#7
semrau-regeneron
closed
3 years ago
2
Add --usr_glm_model_path option
#6
jenchien
closed
3 years ago
0
Fix descriptions in some manual pages.
#5
jenchien
closed
3 years ago
0
Bedtools issue
#4
GBeattie
closed
3 years ago
5
scafe.workflow.sc.solo dies at line 551
#3
lanyanjun
closed
3 years ago
1
Correct path to genome download script in README
#2
TomKellyGenetics
closed
3 years ago
1
update full name for clarity
#1
TomKellyGenetics
closed
3 years ago
1