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cidgoh
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bacpaq
Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data
MIT License
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80 create a nextflow module for igvreports
#93
KijinKims
closed
8 hours ago
0
PR to fix issue 90 (Pipeline fails when test.fa missing)
#92
travis-m-blimkie
opened
10 hours ago
0
Test commit, tweaks to README.
#91
travis-m-blimkie
opened
11 hours ago
0
Pipeline fails when "test.fa" is missing
#90
travis-m-blimkie
opened
11 hours ago
1
Running the pipeline with only "--help" returns error
#89
travis-m-blimkie
opened
12 hours ago
0
Updating nf-core modules and modules.json file required
#88
anwarMZ
closed
12 hours ago
0
Harmonization of Output Across Annotation Modules and Sub-Workflows
#87
anwarMZ
opened
1 week ago
0
Add Preset Parameters for Common Analyses in BACPAQ Workflow
#86
anwarMZ
opened
1 week ago
0
Create a subworkflow for Variant visualization
#85
jimmyliu1326
opened
1 week ago
0
Create a Subworkflow for Variant calling
#84
jimmyliu1326
opened
1 week ago
1
Create a Nextflow module for delta2vcf
#83
jimmyliu1326
closed
9 hours ago
1
Create a nextflow module for core-snp-filter
#82
jimmyliu1326
opened
1 week ago
0
Create a nextflow module for medaka_variant
#81
jimmyliu1326
closed
8 hours ago
1
Create a Nextflow module for igvreports
#80
jimmyliu1326
opened
1 week ago
0
Create a Nextflow module for Snippy_core
#79
jimmyliu1326
opened
1 week ago
0
Create a Nextflow module for Nucmer
#78
jimmyliu1326
closed
8 hours ago
1
Create a Nextflow module for IQTREE
#77
jimmyliu1326
opened
1 week ago
0
Create a Nextflow module for Gubbins
#76
jimmyliu1326
opened
1 week ago
0
Create a Nextflow module for Snippy
#75
jimmyliu1326
opened
1 week ago
0
Bug with aggregation of Quast reports
#73
travis-m-blimkie
opened
1 month ago
0
Squashed some bugs and added automation to the genomics group
#72
anwarMZ
closed
1 month ago
0
update github actons
#71
anwarMZ
closed
1 month ago
0
update github actons
#70
anwarMZ
closed
1 month ago
0
update github actons
#69
anwarMZ
closed
1 month ago
0
update github actons
#68
anwarMZ
closed
1 month ago
0
update github actons
#67
anwarMZ
closed
1 month ago
0
Fixed the error related to empty lists passed to reads arrays in bacpaq
#66
anwarMZ
closed
1 month ago
0
CAT_NANOPORE_FASTQ
#65
anwarMZ
closed
1 month ago
0
fixing typo for multiqc definition in configuration
#64
anwarMZ
closed
1 month ago
0
MultiQC format needs improvement
#63
anwarMZ
closed
1 week ago
1
add customized multiqc config file
#62
azmigueldario
closed
5 months ago
2
Re-branding nf-seqqc to bacpaq
#61
anwarMZ
closed
6 months ago
4
Cleaned up dev branch
#60
anwarMZ
closed
7 months ago
0
#39 CRISPR Subworkflow
#59
jimmyliu1326
closed
9 months ago
0
28 workflow for genome annotation
#58
anwarMZ
closed
9 months ago
0
fixing typos in the gene_annotation
#57
anwarMZ
closed
10 months ago
0
Updated Readme file and conf/test.config. Shovill not working
#56
mayee123
closed
11 months ago
0
#38 sub-workflow for pangenome analysis
#55
jonathho
closed
10 months ago
2
43 create container for peppan
#54
azmigueldario
closed
10 months ago
1
30 create a nextflow module for resfinder
#53
KijinKims
closed
11 months ago
0
#33 create a nextflow module for virsorter2
#52
jimmyliu1326
closed
11 months ago
0
#31 sub-workflow for phage prediction
#51
jimmyliu1326
closed
10 months ago
0
migrated qc database checks from main to seqqc workflow
#50
jimmyliu1326
closed
11 months ago
0
Samplesheet for annotation workflow and stage dummy file when skipping QC
#49
anwarMZ
closed
10 months ago
0
Validation of qc databases shoud be moved to qc workflow
#48
anwarMZ
closed
11 months ago
0
modules for amrprediction in amr_annotation subworkflow
#47
anwarMZ
closed
10 months ago
1
#34 create a sub workflow for plasmid prediction
#46
jimmyliu1326
closed
1 year ago
0
41 create a nextflow module for crisprcastyper
#45
jimmyliu1326
closed
11 months ago
0
32 sub workflow for gene annotation
#44
anwarMZ
closed
10 months ago
1
Create container for PEPPAN
#43
azmigueldario
closed
11 months ago
2
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