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ckmah
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bento-tools
A Python toolkit for subcellular analysis of spatial transcriptomics data
https://bento-tools.readthedocs.io/en/latest/
BSD 2-Clause "Simplified" License
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reload sample data in tutorial to avoid raster bug for now
#101
ckmah
closed
4 months ago
0
Loading in Merfish geopandas .parquet segmentation mask
#100
pakiessling
closed
1 year ago
2
bump version
#99
ckmah
closed
1 year ago
0
patch bugs affecting tutorials
#98
ckmah
closed
1 year ago
1
Ckmah unit tests
#97
ckmah
closed
1 year ago
0
V2.0
#96
ckmah
closed
1 year ago
1
Update python-package.yml
#95
ckmah
closed
1 year ago
0
Bump jupyter-core from 4.10.0 to 4.11.2
#94
dependabot[bot]
closed
1 year ago
1
Bump torch from 1.12.0 to 1.13.1
#93
dependabot[bot]
closed
1 year ago
1
Update python-package.yml
#92
ckmah
closed
1 year ago
0
Update README.md
#91
ckmah
closed
1 year ago
0
Bump markdown-it-py from 2.1.0 to 2.2.0
#90
dependabot[bot]
closed
1 year ago
1
Colocation
#89
ckmah
closed
1 year ago
0
RNAforest: predict subcellular localization patterns tutorial
#88
ckmah
closed
1 year ago
0
Colocalization analysis tutorial
#87
ckmah
closed
1 year ago
0
RNAflow: unsupervised characterization of subcellular regions tutorial
#86
ckmah
closed
1 year ago
0
shape and point feature analysis tutorial
#85
ckmah
closed
1 year ago
0
spatial plotting tutorial
#84
ckmah
closed
1 year ago
0
Data I/O tutorial
#83
ckmah
closed
1 year ago
0
Data ingestion functions
#82
ckmah
closed
1 year ago
0
IO API
#81
ckmah
closed
1 year ago
0
Cleanup API
#80
ckmah
closed
1 year ago
0
Update doc styling
#79
ckmah
closed
1 year ago
0
Tools API
#78
ckmah
closed
1 year ago
0
Plotting API
#77
ckmah
closed
1 year ago
0
Autogenerated API docs
#76
ckmah
closed
1 year ago
0
Unify internal spatial indexing
#75
ckmah
closed
1 year ago
0
Tutorials
#74
ckmah
closed
1 year ago
0
Bump certifi from 2022.6.15 to 2022.12.7
#73
dependabot[bot]
closed
1 year ago
1
Bump pillow from 9.1.1 to 9.3.0
#72
dependabot[bot]
closed
1 year ago
2
update license to UC-provided one
#71
byee4
closed
1 year ago
0
Bump joblib from 1.1.0 to 1.2.0
#70
dependabot[bot]
closed
1 year ago
1
Create LICENSE
#69
ckmah
closed
1 year ago
0
add newer macOS versions to tests
#68
ckmah
closed
2 years ago
1
Bump nbconvert from 6.5.0 to 6.5.1
#67
dependabot[bot]
closed
1 year ago
2
Bump mistune from 0.8.4 to 2.0.3
#66
dependabot[bot]
closed
1 year ago
2
python3.10
#65
ckmah
closed
2 years ago
1
Prepare
#64
ckmah
closed
2 years ago
1
Docs
#63
ckmah
closed
2 years ago
1
Binder
#62
ckmah
closed
2 years ago
0
Pypi dl badge
#61
ckmah
closed
2 years ago
0
Pypi dl badge
#60
ckmah
closed
2 years ago
0
Docs
#59
ckmah
closed
2 years ago
1
ValueError from bento tools 0.1.1 (via pip)
#58
byee4
closed
2 years ago
0
Bump distributed from 2021.8.1 to 2021.10.0
#57
dependabot[bot]
closed
2 years ago
1
Bump notebook from 6.4.2 to 6.4.10
#56
dependabot[bot]
closed
2 years ago
1
make each dataset its own api call
#55
ckmah
closed
2 years ago
0
Bump pillow from 8.3.1 to 9.0.1
#54
dependabot[bot]
closed
2 years ago
1
rename downloaded dataset names
#53
ckmah
closed
2 years ago
0
Bump ipython from 7.26.0 to 7.31.1
#52
dependabot[bot]
closed
2 years ago
1
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