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cnio-bu
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beyondcell
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
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Test failure:gs genes are in uppercase and sc genes are capitalized.
#62
SGMartin
closed
1 year ago
1
Test failure: bcScore(pbmc.raw, gs = gs10)` did not throw the expected error.
#61
SGMartin
closed
1 year ago
0
Fix GetCollections filters and default tests
#60
SGMartin
closed
1 year ago
0
Fix warnings tests by removing dots and spaces
#59
SGMartin
closed
1 year ago
1
GetCollection warnings test fail
#58
SGMartin
closed
1 year ago
1
GetCollection default values test fails
#57
SGMartin
closed
1 year ago
1
Add two new parameters to bcUMAP
#56
mj-jimenez
closed
1 year ago
0
Add tests to beyondcell
#55
mj-jimenez
closed
1 year ago
0
can not find the object "path_to_sc"
#54
Chonghui-Liu
closed
1 year ago
3
Add parameters to bcUMAP
#53
mj-jimenez
closed
1 year ago
1
Give a value to n.genes slot of GenerateGenesets' output
#52
mj-jimenez
closed
1 year ago
0
Solves issue #49
#51
mj-jimenez
closed
1 year ago
0
Report the mode when using a .gmt as input
#50
mj-jimenez
closed
1 year ago
0
Error in bcUMAP
#49
laumtnezg
closed
1 year ago
4
Correct errors in GetCollection
#48
mj-jimenez
closed
1 year ago
0
Modify GetCollection function
#47
mj-jimenez
closed
1 year ago
0
Change underscores by hyphens in sigIDs
#46
mj-jimenez
closed
1 year ago
0
Merge master into developing
#45
mj-jimenez
closed
1 year ago
0
Update sigIDs
#44
mj-jimenez
closed
1 year ago
0
Collections
#43
mj-jimenez
closed
1 year ago
0
Correct drugInfo
#42
mj-jimenez
closed
1 year ago
0
Replace underscores by hyphens
#41
mj-jimenez
closed
1 year ago
0
DrugInfo update
#40
mj-jimenez
closed
1 year ago
0
Fix check for spatial slot. Check if slot len > 0
#39
SGMartin
closed
1 year ago
0
Feat gsc obj
#38
SGMartin
closed
1 year ago
1
Convert PSc and SSc into preloaded GS objects
#37
SGMartin
closed
1 year ago
1
Add feedback on bcRegressOut
#36
SGMartin
closed
1 year ago
0
Solves issue #33
#35
mj-jimenez
closed
1 year ago
0
Subset metadata rows when using bcSubset
#34
mj-jimenez
closed
1 year ago
0
bcAddMetaData doesn't allow for existing columns to be replaced
#33
Fryman93
closed
1 year ago
1
Weight based score calculation
#32
SGMartin
closed
4 months ago
0
Check if images slot has any image in bcSubset
#31
SGMartin
closed
1 year ago
0
questions of PSc and SSc
#30
QSong-github
closed
1 year ago
1
Merge developing into functional_clusters
#29
mj-jimenez
closed
2 years ago
0
Add option to keep beyondcell reductions after merging
#28
mj-jimenez
closed
2 years ago
0
Allow to merge a bc object to its own subset
#27
mj-jimenez
closed
2 years ago
0
Change "comparison"(character) by "inverse.score" (logical)
#26
mj-jimenez
closed
2 years ago
0
Update GenerateGenesets
#25
mj-jimenez
closed
2 years ago
0
Update plots
#24
mj-jimenez
closed
2 years ago
0
Merge developing into bugfix_spatial_subset
#23
mj-jimenez
closed
2 years ago
1
Solve issue #21
#22
mj-jimenez
closed
2 years ago
0
bcScore/bcMerge/bcRecompute errors when using just 1 signature
#21
Fryman93
closed
2 years ago
1
Draft: bugfix spatial subset
#20
SGMartin
closed
2 years ago
1
Add novel cutoff SSc signatures
#19
SGMartin
closed
1 year ago
0
Setup CI
#18
SGMartin
closed
1 year ago
1
Merge developing into SSc
#17
mj-jimenez
closed
2 years ago
0
Merge master into developing
#16
mj-jimenez
closed
2 years ago
0
Update tutorial hyperlinks with github URLs
#15
mj-jimenez
closed
2 years ago
0
Correct error when plotting non-spatial datasets
#14
mj-jimenez
closed
2 years ago
0
Merge master into developing
#13
mj-jimenez
closed
2 years ago
0
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