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cnio-bu
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beyondcell
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
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Error when plotting spatial plots of a single slide
#110
mj-jimenez
closed
1 year ago
1
Fix bcRanks and FindDrugs to work with new db schema
#109
SGMartin
closed
1 year ago
0
bcRanks/FindDrugs not updated with new database schema
#108
SGMartin
closed
1 year ago
1
beyondcell can not be run in windows?
#107
Crick0509
closed
1 year ago
1
Error in result[sigs, cells, drop = FALSE] : subscript out of bounds in bcRegressOut
#106
SGMartin
closed
1 year ago
3
Add a linter to the CI
#105
SGMartin
closed
3 months ago
0
beyondcell 2 alpha version
#104
SGMartin
closed
1 year ago
0
BC2_RC0
#103
SGMartin
closed
1 year ago
0
Update CI
#102
mj-jimenez
closed
1 year ago
0
Remove umap-learn
#101
mj-jimenez
closed
1 year ago
1
Add spaces to message in bcScore
#100
mj-jimenez
closed
1 year ago
0
Fix test-GenerateGenesesets.R messages
#99
SGMartin
closed
1 year ago
0
Correct message in bcScore
#98
mj-jimenez
closed
1 year ago
1
Correct bcRegressOut
#97
mj-jimenez
closed
1 year ago
0
Solves #80 and #81
#96
mj-jimenez
closed
1 year ago
0
Update the value of complete cases
#95
mj-jimenez
closed
1 year ago
0
Remove print line in bcUMAP
#94
mj-jimenez
closed
1 year ago
0
Add unit tests for genesets::readGMT
#93
SGMartin
closed
1 year ago
0
Solves #80
#92
mj-jimenez
closed
1 year ago
0
Solves #79
#91
mj-jimenez
closed
1 year ago
0
Error (test-GenerateGenesets.R:11): errors
#90
mj-jimenez
closed
1 year ago
1
Failure in test-bcScore.R default values
#89
mj-jimenez
closed
1 year ago
1
Failure in test-bcScore.R messages
#88
mj-jimenez
closed
1 year ago
1
Failure (test-bcScore.R:198): warnings
#87
mj-jimenez
closed
1 year ago
1
Failure (test-bcScore.R:178): errors
#86
mj-jimenez
closed
1 year ago
1
Solves #78
#85
mj-jimenez
closed
1 year ago
0
Update beyondcell recipe
#84
SGMartin
closed
1 year ago
1
I have the same problem Imputing normalized BCS...
#83
Phoenix12580
closed
1 year ago
2
Solves #70
#82
mj-jimenez
closed
1 year ago
0
Failure in test-bcRegressOut.R messages
#81
mj-jimenez
closed
1 year ago
0
Failure (test-bcRegressOut.R:629): default values
#80
mj-jimenez
closed
1 year ago
0
Failure (test-bcRegressOut.R:224): warnings
#79
mj-jimenez
closed
1 year ago
0
Error (test-bcRegressOut.R:187): errors
#78
mj-jimenez
closed
1 year ago
0
Solves #63 and #64
#77
mj-jimenez
closed
1 year ago
0
Add r-hdf5r as dependency
#76
SGMartin
closed
1 year ago
2
Remove gdata dependency calls
#75
SGMartin
closed
1 year ago
0
Replace CaseFraction with a tidy alternative
#74
SGMartin
closed
1 year ago
1
Remove see dependency in bcCellCycle
#73
SGMartin
closed
3 months ago
0
Replace gdata::trim with builtincode or a tidy alternative
#72
SGMartin
closed
1 year ago
1
Replace useful::find.case with a tidyverse alternative
#71
SGMartin
closed
1 year ago
1
Replace qusages::read.gmt with a custom function
#70
SGMartin
closed
1 year ago
0
bcMerge on a list
#69
SGMartin
opened
1 year ago
1
Can beyondcell package be installed under windows system?
#68
Phoenix12580
closed
1 year ago
4
Imputing normalized BCS...
#67
dys1997
closed
1 year ago
2
Fix warning for upper/capitalized gene names
#66
SGMartin
closed
1 year ago
0
Fix normalization test in bcScore
#65
SGMartin
closed
1 year ago
0
Test failure: no non-missing arguments to max; returning -Inf
#64
SGMartin
closed
1 year ago
2
Test warning: warning (test-bcScore.R:349): default values
#63
SGMartin
closed
1 year ago
1
Test failure:gs genes are in uppercase and sc genes are capitalized.
#62
SGMartin
closed
1 year ago
1
Test failure: bcScore(pbmc.raw, gs = gs10)` did not throw the expected error.
#61
SGMartin
closed
1 year ago
0
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