combogenomics medusa issues

combogenomics / medusa

A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.

http://combo.dbe.unifi.it/medusa/

GNU General Public License v3.0

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issues

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Create a new release

#36 loraine-gueguen opened 2 months ago
0
/bin/python2.7 is hard coded into medusa/src/Scaffolder.java

#35 chazgoo opened 2 years ago
0
Medusa error

#34 kayobianco closed 2 years ago
1
Python 3

#33 pseudogene closed 2 years ago
1
Aggiunta skipmapping e keepTemp

#32 gianlucacolotto closed 3 years ago
1
Restarting failed anchoring

#31 LZarri closed 3 years ago
7
Numpy error in netcon_mummer.py at building network step

#30 anjola90 opened 4 years ago
0
Missing medusa.jar file?

#29 sriramsrikant closed 4 years ago
1
Where is the medusa.jar? I don't find this file.

#28 germant13 closed 5 years ago
2
Bio module import error

#27 jananiharan closed 5 years ago
1
Scaffolding gaps

#26 jdmontenegro opened 5 years ago
0
multithreaded Mummer

#25 jdmontenegro opened 5 years ago
2
Update to Java8 and Python 3.6

#24 oschwengers closed 5 years ago
3
Python 3.6 cPickle import issue on script

#23 mberacochea closed 5 years ago
1
please add networkx in Readme as dependency

#22 mictadlo closed 6 years ago
1
MUMmer version?

#21 bibilujan closed 6 years ago
7
NullPointerException after "cleaning the network" step?

#20 cmdcolin closed 7 years ago
4
Error from python syntax in 2.6, works in 2.7

#19 cmdcolin closed 7 years ago
2
Getting the distance estimation as an output

#18 ShaiberAlon opened 7 years ago
4
Using a graph (gexf) as input

#17 ShaiberAlon opened 7 years ago
2
No edge weight in gexf output

#16 ShaiberAlon closed 7 years ago
1
Parallelization

#15 anandksrao closed 6 years ago
11
No module named cPickle

#14 fetyj closed 7 years ago
3
Temp files location and removal

#13 anandksrao closed 7 years ago
9
Controlling run parameters

#12 anandksrao closed 7 years ago
1
Bad MumMER?

#11 anandksrao closed 7 years ago
2
Stuck with building network

#10 krostifangers closed 7 years ago
7
Building the network... forever

#9 carlos88morais closed 7 years ago
10
this to these

#8 ShaiberAlon closed 7 years ago
0
w2 parameter explanation

#7 habibr closed 8 years ago
1
textlen=812730787 larger than maximal textlen=536870908

#6 macmanes closed 9 years ago
2
Performance: Biggest genome attempted ?

#5 colindaven opened 9 years ago
27
ERROR: The reference file may contain sequences with non-unique header Ids

#4 genaev closed 9 years ago
27
.inp file extension required on input fasta files ?`

#3 colindaven closed 9 years ago
1
Building the network error

#2 genaev closed 9 years ago
12
Bug fixed in printing an ouput file. Option "gexf" added.

#1 cyberbea closed 9 years ago
2