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common-workflow-lab
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galaxy
Fork of Galaxy (http://galaxyproject.org/) attempting to implement the CWL spec.
https://www.commonwl.org
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Refactor specifying an object_id for workflows into Galaxy core.
#96
jmchilton
opened
5 years ago
0
Patches jra001k 20181227
#95
ghost
closed
5 years ago
1
The tool 'tmpugCygk#infernal-cmsearch-v1.1.2.cwl' is missing. Cannot build workflow module
#94
ghost
opened
5 years ago
0
Map tar file to 'Directory' type
#93
ghost
opened
5 years ago
0
KeyError exception when saving a packed workflow
#92
ghost
opened
5 years ago
0
TypeError exception when importing a packed workflow
#91
ghost
opened
5 years ago
0
Add labels to the new conformance tests + update test cases
#90
hmenager
closed
6 years ago
1
Add CWL conformance tests (the ok ones) to Travis
#89
hmenager
closed
6 years ago
0
Using galactic_cwl tools.
#88
jmchilton
opened
6 years ago
0
Run the EBI transcripts annotation workflows
#87
hmenager
opened
6 years ago
0
Update common_startup.sh
#86
mr-c
closed
6 years ago
3
[WIP] modify run_cwl script to make it behave like cwltool
#85
hmenager
closed
6 years ago
2
Conformance test No 101 does not finish
#84
manabuishii
closed
6 years ago
1
Fix missing attribute `_macro_paths` error
#83
manabuishii
closed
6 years ago
1
Allow Conditional Tool Parameters
#82
jmchilton
opened
6 years ago
0
Enable CWL Workflows to Specify Tools by "ID".
#81
jmchilton
opened
6 years ago
1
Build a UX for Secondary Files and Directory Types
#80
jmchilton
opened
6 years ago
0
Build a UX for Defining Record Types
#79
jmchilton
opened
6 years ago
0
Update History -> Workflow Extraction to Support CWL Tools and Concepts
#78
jmchilton
opened
6 years ago
0
Update Workflow Export to Support Re-exporting CWL
#77
jmchilton
opened
6 years ago
0
Update the Workflow Editor to Support All CWL Concepts
#76
jmchilton
opened
6 years ago
0
Extend Galaxy Tool Form to render FieldType parameters.
#75
jmchilton
opened
6 years ago
0
Rework and Upstream Workflow Input Representation
#74
jmchilton
closed
5 years ago
1
Upstream Workflow and Step Output Recording.
#73
jmchilton
closed
6 years ago
0
Upstream Directory Type Implementation
#72
jmchilton
closed
5 years ago
1
Upstream Record Type Implementation
#71
jmchilton
opened
6 years ago
0
Implement default Files for workflow inputs.
#70
jmchilton
closed
3 years ago
1
Allow valueFrom expressions when computing subworkflow inputs.
#69
jmchilton
opened
6 years ago
0
Type unions with array types do not seem to work currently.
#68
jmchilton
closed
6 years ago
2
Implement "inferred" CWL secondaryFiles.
#67
jmchilton
opened
6 years ago
0
Rework Docker run - at least when no base command is specified.
#66
jmchilton
closed
6 years ago
9
Wrong location exposed as CWL state for expression tools
#65
jmchilton
closed
6 years ago
1
Implement directories in secondary files.
#64
jmchilton
opened
7 years ago
0
Run chipseq workflow
#63
jmchilton
closed
3 years ago
0
Run BCBIO Worklfow
#62
jmchilton
closed
3 years ago
0
Implement Conformance Test Exposing Secondary Files in valueFrom
#61
jmchilton
closed
6 years ago
1
Run GA4GH gdc_dnaseq_transform workflow.
#60
jmchilton
closed
3 years ago
3
Create a Design Document Discussing CWL to Galaxy State Mapping
#59
jmchilton
opened
7 years ago
0
Clean Up and Upstream Conformance Tests
#58
jmchilton
closed
6 years ago
0
Implement Any and Union Type Outputs from Tools/Workflows
#57
jmchilton
closed
7 years ago
1
Implement Optional Inputs to Workflows
#56
jmchilton
closed
7 years ago
1
Implement Record Inputs to Workflows
#55
jmchilton
closed
7 years ago
1
Redo MultipleInputFeatureRequirement toward Merge Options
#54
jmchilton
closed
7 years ago
0
Update Planemo Support for CWL Workflows in Galaxy
#53
jmchilton
closed
3 years ago
1
Implement StepInputExpressionRequirements.
#52
jmchilton
closed
7 years ago
4
Implement Scattering Across Subworkflows
#51
jmchilton
closed
7 years ago
1
Implement conditional input types to workflows.
#50
jmchilton
closed
7 years ago
1
Track WorkflowStepInput Information with new Model
#49
jmchilton
closed
7 years ago
1
Implement Directory Types
#48
jmchilton
closed
7 years ago
2
Implement a subset of the Common Workflow Language.
#47
jmchilton
closed
2 years ago
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