issues
search
compomics
/
psm_utils
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
https://psm-utils.readthedocs.io
Apache License 2.0
24
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Minor changes
#47
RalfG
closed
1 year ago
0
Update regex pattern in _parse_peptidoform in msamanda.py
#46
louisebuur
closed
1 year ago
1
Add support for terminal modifications in `Peptidoform.add_fixed_modifications`
#45
RalfG
closed
2 weeks ago
1
Add reader for Proteome Discoverer MSF files; other changes/fixes/additions
#44
RalfG
closed
1 year ago
0
Add ionbot reader; read ion mobility from mzid files
#43
ArthurDeclercq
closed
12 months ago
2
io: Raise descriptive exception when passed filetype is not known
#42
RalfG
closed
1 year ago
1
io.percolator: Add option to write score and charge to PIN as features
#41
RalfG
closed
1 year ago
1
Revert comparison operator change from v0.4.0
#40
RalfG
closed
1 year ago
0
Catch invalid position of modification in peptide
#39
paretje
closed
1 year ago
2
Minor improvements
#38
RalfG
closed
1 year ago
1
Updated msamanda.py to include new column names in the MS Amanda output CSV file
#37
louisebuur
closed
1 year ago
3
Speed up writing of mzIdentML files
#36
RalfG
opened
1 year ago
0
Rename Sage `*_fdr` to `*_q`
#35
lazear
closed
1 year ago
0
[Pitch] Support for .sqlite based formats
#34
jspaezp
closed
10 months ago
1
Minor fixes
#33
RalfG
closed
1 year ago
1
Minor fixes
#32
RalfG
closed
1 year ago
0
Add support for reading Sage PSM files; various minor fixes
#31
ArthurDeclercq
closed
1 year ago
4
Error MzidReader
#30
Rebecca353
closed
1 year ago
3
Add parsing of q-values from mzIdentML files
#29
RalfG
closed
1 year ago
1
Add `is_modified` property to `Peptidoform`
#28
RalfG
closed
1 year ago
0
Fix issues reading Comet and MSAmanda mzid files
#27
RalfG
closed
1 year ago
0
Update citation to JPR publication
#26
RalfG
closed
1 year ago
0
Fix badges after badges/shields/issues/8671
#25
RalfG
closed
1 year ago
0
Increase test coverage
#24
RalfG
opened
1 year ago
0
Various fixes
#23
RalfG
closed
1 year ago
1
Decrease time of MzidReader by inferring source another way
#22
ArthurDeclercq
opened
1 year ago
0
Version 0.1.0
#21
RalfG
closed
1 year ago
0
Expand docstrings and quickstart
#20
RalfG
closed
1 year ago
0
Complete checklist for first release
#19
RalfG
closed
1 year ago
1
peptidoform.proforma is used to write to certain formats that may not support the charge suffix (e.g. Percolator)
#18
RalfG
closed
1 year ago
0
Add psm_utils online info to readme
#17
RalfG
closed
1 year ago
0
Online: Add example file, minor plot fixes
#16
RalfG
closed
1 year ago
0
mzIdentML writer
#15
ArthurDeclercq
closed
1 year ago
1
Msamanda reader implementation
#14
ArthurDeclercq
closed
1 year ago
1
remove required columns & convoluted functions
#13
ArthurDeclercq
closed
2 years ago
1
maxquant_changes
#12
ArthurDeclercq
closed
2 years ago
0
psm_utils online; various related changes
#11
RalfG
closed
2 years ago
1
Expand documentation
#10
RalfG
closed
2 years ago
1
Add OpenMS idXML support
#9
RalfG
closed
2 years ago
0
TSVReader and TSVWriter
#8
RalfG
closed
2 years ago
0
Add Percolator Tab support (PIN and POUT)
#7
RalfG
closed
2 years ago
1
MzIdentMl support
#6
ArthurDeclercq
closed
2 years ago
1
Feature list for first release
#5
RalfG
closed
1 year ago
1
Add module for X!Tandem
#4
RalfG
closed
2 years ago
1
peptide_record
#3
RalfG
closed
2 years ago
1
Maxquant reader
#2
ArthurDeclercq
closed
2 years ago
2
Maxquant parser
#1
ArthurDeclercq
closed
2 years ago
1
Previous