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cytomining
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profiling-recipe
Image-based Profiling Recipe
BSD 3-Clause "New" or "Revised" License
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Update environment.yml
#42
ErinWeisbart
opened
4 months ago
1
Read .csv or .csv.gz
#41
ErinWeisbart
opened
10 months ago
0
Implement filtering for minimum cell counts
#40
bethac07
closed
10 months ago
0
First draft of subgroup normalization
#39
bethac07
opened
1 year ago
3
Provide instructions on how to run the JUMP-specific profiling recipe
#38
shntnu
opened
1 year ago
0
Fix dataframe concatenation error
#37
niranjchandrasekaran
closed
1 year ago
0
Add info about using multiple AWS accounts
#36
bethac07
closed
1 year ago
0
Conda env out of date
#35
bethac07
opened
2 years ago
2
Create dvc for files in the gct folder
#34
niranjchandrasekaran
opened
2 years ago
0
Create CITATION.cff
#33
bethac07
closed
2 years ago
0
Create a citation file
#32
bethac07
closed
2 years ago
0
Updates to instructions
#31
niranjchandrasekaran
closed
2 years ago
7
Recipe wish list
#30
niranjchandrasekaran
opened
2 years ago
15
Create correlation histograms routinely as part of the recipe
#29
bethac07
opened
2 years ago
0
Reorder columns
#28
niranjchandrasekaran
closed
2 years ago
0
Change concat join from "inner" to "outer"
#27
niranjchandrasekaran
closed
2 years ago
0
Update qc step instructions
#26
niranjchandrasekaran
closed
2 years ago
0
Switch LFS to DVC
#25
ErinWeisbart
closed
2 years ago
4
Tackle nan values
#24
niranjchandrasekaran
closed
2 years ago
0
Update recipe
#23
niranjchandrasekaran
closed
2 years ago
0
Make Metadata_Plate a column of str
#22
niranjchandrasekaran
closed
2 years ago
0
Update pycytominer version
#21
niranjchandrasekaran
closed
2 years ago
0
Update pycytominer
#20
niranjchandrasekaran
closed
2 years ago
0
Merge pull request #36 from cytomining/master
#19
shntnu
closed
3 years ago
0
Create profiling recipe
#18
niranjchandrasekaran
closed
3 years ago
1
Create per-batch summary CSV and GCT files in the recipe
#17
bethac07
closed
2 years ago
1
Convert int FOV to list
#16
niranjchandrasekaran
closed
3 years ago
0
Make scripts compatible with pycytominer
#15
niranjchandrasekaran
closed
3 years ago
0
Include consensus building as a recipe step
#14
gwaybio
opened
3 years ago
0
Add input/output file specification in config yaml
#13
gwaybio
opened
3 years ago
0
Migrate from subprocess to workflow language
#12
gwaybio
opened
3 years ago
1
Move from linear execution strategy to modular block design
#11
gwaybio
opened
3 years ago
2
Port JUMP progress back into profiling-recipe
#10
gwaybio
closed
2 years ago
1
Include aggregation in recipe step
#9
gwaybio
closed
2 years ago
1
Create directories as part of a recipe step
#8
gwaybio
opened
3 years ago
0
Add plate1 batch
#7
niranjchandrasekaran
closed
3 years ago
0
Add stain4 batches
#6
niranjchandrasekaran
closed
3 years ago
0
Stain3 batches
#5
niranjchandrasekaran
closed
4 years ago
0
Updates
#4
shntnu
closed
4 years ago
0
Change permissions
#3
shntnu
closed
4 years ago
0
Create create_dirs.sh
#2
shntnu
closed
4 years ago
0
Update README.md
#1
shntnu
closed
4 years ago
0