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d3b-center
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OpenPedCan-analysis
The analysis repository for the Open Pediatric Cancer Project
https://d3b-center.github.io/OpenPedCan-analysis/
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Analysis Update: Add EWS subtyping workflow to README
#465
zzgeng
closed
11 months ago
1
Analysis update: Add CRANIO subtyping workflow to README
#464
zzgeng
closed
11 months ago
0
Analysis update: Add embryonal workflow to README
#463
zzgeng
closed
11 months ago
1
Analysis update: Add NBL workflow to README
#462
zzgeng
closed
11 months ago
3
Analysis update: Add EPN workflow to README
#461
zzgeng
closed
11 months ago
2
Analysis update: Add MB workflow
#460
zzgeng
closed
11 months ago
0
Analysis update: Add create-subset-file
#459
zzgeng
closed
10 months ago
2
Add workflow to LGG README
#458
zzgeng
closed
11 months ago
1
Update focal-cn-file-preparation README
#457
zzgeng
closed
12 months ago
0
Missing or erroneous named files in the `focal-cn-file-preparation` module
#456
AntoniaChroni
closed
12 months ago
0
Updated analysis: Update create-subset-files with coming HOPE data for v13
#455
zzgeng
closed
10 months ago
1
Analysis update: Add workflow for HGG molecular subtyping
#454
zzgeng
closed
11 months ago
1
update cancer group
#453
zzgeng
closed
11 months ago
1
Updated analysis: Update the cancer_group for two samples
#452
zzgeng
closed
11 months ago
0
Analysis update: add DMG, EGFR to methyl mol subtype
#451
zzgeng
closed
11 months ago
0
add PXA to molecular subtype
#450
zzgeng
closed
11 months ago
1
Updated analysis: Add Spine CNS region as a midline region in HGG subtyping
#449
zzgeng
closed
10 months ago
1
Updated analysis: HGG subtyping - add DMG, EGFR methyl subtype
#448
jharenza
closed
11 months ago
0
Analysis update: Organize Dockerfile and reduce docker size
#447
zzgeng
closed
1 year ago
1
Update analysis: Fix a typo in molecular_subtyping_HGG script
#446
zzgeng
closed
1 year ago
0
👷 Change build and run analysis conditions
#445
devbyaccident
closed
1 year ago
0
Updated analysis: Add H3 K28I mutation in DMG molecular subtyping
#444
zzgeng
closed
1 year ago
1
Updated analysis: Add PXA in HGG molecular subtyping
#443
zzgeng
closed
10 months ago
1
Updated analysis: include proteomic data for GitHub CI
#442
zzgeng
closed
10 months ago
1
7316-4439 and 7316-7511 RNA-Seq do not contain `KIAA1549::BRAF` fusion
#441
jharenza
closed
9 months ago
2
Analysis update: Reduce docker size
#440
zzgeng
closed
1 year ago
0
Analysis update: add K28I mutation into subtyping
#439
zzgeng
closed
1 year ago
1
Updated analysis: include DGD fusion in LGG subtyping module
#438
zzgeng
closed
1 year ago
1
🚧 Test
#437
devbyaccident
closed
1 year ago
0
Create CODEOWNERS
#436
devbyaccident
closed
1 year ago
1
Rerun TMB calculation - test run
#435
AntoniaChroni
closed
1 year ago
1
`biospecimen_id_to_bed_map.tsv` typo needs to be updated for v13
#434
jharenza
closed
10 months ago
2
Analysis update: change LGG methylation subtyping
#433
zzgeng
closed
1 year ago
0
Updated analysis: LGG methyl subtypes
#432
jharenza
closed
1 year ago
1
enrich cnv non-GATK samples
#431
zzgeng
closed
1 year ago
1
Analysis update: remove MTP section from github CI file
#429
zzgeng
closed
1 year ago
0
Missing TMB in Kids_First_Biospecimen_ID in the PBTA - rerun tmb-calculation module
#430
AntoniaChroni
closed
1 year ago
14
Sample rerun and re-release due to bug causing `t_alt_count == 0` in consensus MAF
#428
jharenza
closed
10 months ago
2
DGD consented panel file transfer (take 2)
#427
jharenza
closed
1 year ago
3
Updated analysis: Delete/archieve the unused modules
#426
zzgeng
closed
10 months ago
0
Updated analysis: Reduce dockerfile size
#425
zzgeng
closed
1 year ago
1
Updated analysis: remove MTP module from GitHub actions
#424
zzgeng
closed
1 year ago
1
Updated analysis: Typo in molecular_subtyping_HGG module
#423
zzgeng
closed
10 months ago
1
Create miRNA-Seq expression matrix
#422
jharenza
closed
9 months ago
2
Enrich testing files for non-GATK CNV bs_ids
#421
jharenza
closed
1 year ago
2
v13 merge files updates and QC code rerun
#420
jharenza
closed
1 year ago
22
Analysis Update: merge cnv files
#419
zzgeng
closed
1 year ago
1
Updated analysis: merge cnv-consensus data
#418
zzgeng
closed
1 year ago
1
(2/N) Pre-release data QC
#417
zzgeng
closed
11 months ago
1
Transfer of consented DGD data to D3b s3
#416
aadamk
closed
1 year ago
16
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