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d3b-center
/
OpenPedCan-analysis
The analysis repository for the Open Pediatric Cancer Project
https://d3b-center.github.io/OpenPedCan-analysis/
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(20/N) Independent specimens V13
#507
jharenza
closed
8 months ago
1
(19/N) integrate v13 + new histology
#506
jharenza
closed
8 months ago
2
(18/N) Pathology v13
#505
jharenza
closed
8 months ago
1
`C4118901-Tumor` should be LGG, not HGG per path free text dx
#504
jharenza
closed
7 months ago
1
(17/N) v13 release: run NBL subtype with v13 data
#503
zzgeng
closed
8 months ago
0
(16/N) v13 release: LGAT module with v13 data
#502
zzgeng
closed
8 months ago
1
Lgat v13
#501
zzgeng
closed
8 months ago
0
Hgg v13 (15/N)
#500
jharenza
closed
8 months ago
1
Pineo v13 (14/N)
#499
jharenza
closed
8 months ago
1
ATRT v13 (13/N)
#498
jharenza
closed
8 months ago
1
Neurocytoma v13 (12/N)
#497
jharenza
closed
8 months ago
1
EWS subtyping v13 (11/N)
#496
jharenza
closed
8 months ago
1
Chordoma v13 subtyping (10/N)
#495
jharenza
closed
8 months ago
1
(9/N) v13 release: Rerun embryonal subtype v13
#494
zzgeng
closed
8 months ago
1
(8/N) v13 release: Run EPN subtyping for v13
#493
zzgeng
closed
8 months ago
3
(7/N) v13 release: Re-run CRANIO module with v13 data
#492
zzgeng
closed
8 months ago
1
(6/N) v13 release: Mb subtyping for v13
#491
zzgeng
closed
8 months ago
1
BS_H1XPVS9A is malignant PXA
#490
jharenza
closed
8 months ago
3
(5/N) v13 release: run tp53
#489
zzgeng
closed
8 months ago
1
(4/N) v13 release: Run focal-CN, independent sample, and fusion modules
#488
zzgeng
closed
8 months ago
2
Updated analysis: Fusion filtering to take in annoFuse file
#487
jharenza
closed
8 months ago
1
Updated analysis: create subset files rework
#486
jharenza
opened
8 months ago
0
(3/N) v13 release: Run consensus CNV modules for v13 release
#485
zzgeng
closed
8 months ago
0
Analysis update: Incorporate the feedback of HOPE non-HGG samples for v13
#484
zzgeng
closed
8 months ago
0
create separate yaml scripts for mem-intensive jobs
#483
jharenza
closed
9 months ago
1
Updated analysis: add PB subtyping in the `run-for-subtyping.sh` script for v13
#482
jharenza
closed
8 months ago
1
update readmes for deprecated modules, remove unused modules
#481
jharenza
closed
9 months ago
2
V12 subset enrich for samples with TP53 SV (1/2)
#480
jharenza
closed
8 months ago
0
add exclude path diagnosis of PB in EMB subtyping module
#479
jharenza
closed
9 months ago
1
update TP53 module/fix HGG discrepancies (2/2)
#478
jharenza
closed
8 months ago
0
Updated analysis: Mol subtyping integrate - check discrepancies
#477
jharenza
closed
8 months ago
2
New Analysis: add Pineoblastoma subtype module
#476
zzgeng
closed
9 months ago
3
Update TCGA/GTEX files for v13
#475
jharenza
closed
9 months ago
3
(1/N) v13 release: Update download script and release note
#474
zzgeng
closed
8 months ago
1
(2/N) V13 release: pre-release QC for v13 data
#473
zzgeng
closed
8 months ago
1
Update analysis: Update age cutoff for CRANIO, PAP
#472
zzgeng
closed
9 months ago
0
Updated analysis: Change the age cutoff for CRAINO, PAP
#471
zzgeng
closed
9 months ago
0
Updated analysis: Embryonal samples with different methylation subtype and molecular subtype
#470
zzgeng
opened
9 months ago
0
v13 release
#469
jharenza
closed
8 months ago
2
Updated analysis: EPN Molecular subtype module does not contain code for "EPN, SP"
#468
zzgeng
closed
7 months ago
1
Analysis Update: Add ATRT subtyping workflow to README
#467
zzgeng
closed
9 months ago
0
Analysis Update: Add neurocytoma workflow to README
#466
zzgeng
closed
9 months ago
1
Analysis Update: Add EWS subtyping workflow to README
#465
zzgeng
closed
9 months ago
1
Analysis update: Add CRANIO subtyping workflow to README
#464
zzgeng
closed
9 months ago
0
Analysis update: Add embryonal workflow to README
#463
zzgeng
closed
9 months ago
1
Analysis update: Add NBL workflow to README
#462
zzgeng
closed
9 months ago
3
Analysis update: Add EPN workflow to README
#461
zzgeng
closed
9 months ago
2
Analysis update: Add MB workflow
#460
zzgeng
closed
9 months ago
0
Analysis update: Add create-subset-file
#459
zzgeng
closed
8 months ago
2
Add workflow to LGG README
#458
zzgeng
closed
9 months ago
1
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