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d3b-center
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OpenPedCan-analysis
The analysis repository for the Open Pediatric Cancer Project
https://d3b-center.github.io/OpenPedCan-analysis/
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D3b Bix Dev Feature: Fix bug
#552
migbro
closed
4 months ago
1
v15 data release - update TCGA and GTEX count and TPM matrices
#551
jharenza
closed
4 months ago
1
D3b Bix Dev Feature: Change Docker image
#550
migbro
closed
4 months ago
1
Missing TCGA counts from v14
#549
komalsrathi
closed
4 months ago
14
Update data-files-description to add miRNA file
#548
jharenza
closed
4 months ago
1
Pull survival module from OpenPBTA
#547
jharenza
closed
5 months ago
3
V14 - subset files (2/2)
#546
jharenza
closed
5 months ago
0
V14 - Rerun Tp53 and molecular subtyping (1/2)
#545
jharenza
closed
5 months ago
1
V14 - create subset files (2/2)
#544
jharenza
closed
6 months ago
1
immune-deconv package issues
#543
jharenza
opened
6 months ago
0
v14 - rerun TP53, subtyping, independent specimens (1/2)
#542
jharenza
closed
6 months ago
2
update immune deconv package
#541
jharenza
closed
6 months ago
1
Run mutational signatures on v13
#540
zzgeng
closed
5 months ago
1
Revert "remove figures folder"
#539
jharenza
closed
6 months ago
0
EGFR in DMG
#538
zzgeng
opened
6 months ago
0
7316-8104 has wrong broad/short histology
#537
jharenza
closed
5 months ago
1
Analysis update: Add methylation in LGAT workflow
#536
zzgeng
closed
6 months ago
4
Update V13 histologies file README
#535
jharenza
closed
6 months ago
0
update paths to `dev` instead of master for analysis README
#534
jharenza
closed
5 months ago
2
Add Methylation to LGAT subtyping chart
#533
sickler-alex
closed
6 months ago
1
Updated analysis: Add EGFR as gene of interests in HGG molecular subtyping
#532
zzgeng
opened
6 months ago
0
(21/21) Subset v13
#531
jharenza
closed
6 months ago
0
(20/N) Independent specimens v13
#530
jharenza
closed
6 months ago
1
(19/N) Integrate/histology v13
#529
jharenza
closed
6 months ago
0
(18/N) Pathology v13
#528
jharenza
closed
6 months ago
0
(17/N) NBL v13
#527
jharenza
closed
6 months ago
0
(16/N) LGG v13
#526
jharenza
closed
6 months ago
0
(15/N) HGG v13
#525
jharenza
closed
6 months ago
0
(14/N) Pineoblastoma v13
#524
jharenza
closed
6 months ago
0
(13/N) ATRT v13
#523
jharenza
closed
6 months ago
0
(12/N) Neurocytoma v13
#522
jharenza
closed
6 months ago
0
(11/N) EWS v13
#521
jharenza
closed
6 months ago
0
(10/N) Chordoma v13
#520
jharenza
closed
6 months ago
0
(9/N) Embryonal v13
#519
jharenza
closed
6 months ago
0
(8/N) EPN v13
#518
jharenza
closed
6 months ago
0
(6-7/N) MB and CRANIO v13
#517
jharenza
closed
6 months ago
0
(5/N) TP53 v13
#516
jharenza
closed
6 months ago
0
(4-D/N) GSVA v13
#515
jharenza
closed
6 months ago
0
(4-C/N) TMB v13
#514
jharenza
closed
6 months ago
0
(4-B/N) update and run fusion summary
#513
jharenza
closed
6 months ago
0
(4-A/N) Focal CN v13
#512
jharenza
closed
6 months ago
0
Updated analysis: focal cn module- remove bit putting germline sex from WGS to WXS samples
#511
jharenza
opened
6 months ago
1
(3-B/N) GISTIC v13
#510
jharenza
closed
6 months ago
0
(3-A/N) Indep filt fus v13
#509
jharenza
closed
6 months ago
0
(21/21) Subset v13
#508
jharenza
closed
6 months ago
1
(20/N) Independent specimens V13
#507
jharenza
closed
6 months ago
1
(19/N) integrate v13 + new histology
#506
jharenza
closed
6 months ago
2
(18/N) Pathology v13
#505
jharenza
closed
6 months ago
1
`C4118901-Tumor` should be LGG, not HGG per path free text dx
#504
jharenza
closed
5 months ago
1
(17/N) v13 release: run NBL subtype with v13 data
#503
zzgeng
closed
7 months ago
0
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