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dancsi
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OrthoCCTools
Computational coiled-coil peptide design toolkit, written in modern C++
https://www.dancsi.net/icipa
MIT License
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Cutting away amino acids on alignment
#19
ajasja
closed
3 years ago
2
Implement another scoring function (qCIPA)
#18
ajasja
opened
6 years ago
20
Access scorer functionality from Python
#17
ajasja
opened
6 years ago
1
bcipa score function and alignments
#16
ajasja
opened
6 years ago
2
Add comment char to prefix command line
#15
ajasja
closed
6 years ago
0
[Solver] No *.current file (and only one set found)
#14
ajasja
opened
6 years ago
7
Implement condensed representation of symmetric matrices.
#13
ajasja
opened
6 years ago
0
Printing options values in scorer
#12
ajasja
opened
6 years ago
0
Compatibility options in new fast score
#11
ajasja
closed
6 years ago
0
New and old scorer return different results when using alignments
#10
ajasja
opened
6 years ago
3
*.set.current in the new version of solver
#9
ajasja
closed
6 years ago
3
Header of bin score file
#8
ajasja
closed
6 years ago
4
Scoring 6-heptade sets
#7
ajasja
closed
6 years ago
6
Build problems
#6
ajasja
closed
6 years ago
47
Static build
#5
ajasja
opened
7 years ago
2
Print used options
#4
ajasja
closed
7 years ago
3
orientation shoud accept short forms
#3
ajasja
closed
7 years ago
1
Using --max-heptad-displacement=1 increases running time by 23x instead of 3x
#2
ajasja
closed
7 years ago
17
Requested pathscores.datdoes not exist
#1
ajasja
closed
7 years ago
3
Antiparallel scan
#21
ajasja
opened
7 years ago
4
Compiling with 32 bit platform
#22
ajasja
closed
3 years ago
0
read_scores_binary does not load the IDs from the fasta file
#23
ajasja
closed
3 years ago
9
Solver is not outputting all sets
#24
ajasja
closed
3 years ago
4
Global variables in read_initial_set
#25
ajasja
closed
3 years ago
2
Specify the location of alll.in in fastscore
#26
ajasja
closed
3 years ago
1
Specify out-name in fastscore
#27
ajasja
closed
3 years ago
1
Specify alignments as parameters in fastscore
#28
ajasja
closed
3 years ago
1
Specify the out-name for current clique
#29
ajasja
closed
3 years ago
2
Raise exception if score_complete is called before init_score_complete
#30
ajasja
closed
3 years ago
0
score_rfe and score_fong_svm are defined but not implemented
#31
ajasja
closed
3 years ago
1
fastscore test app does not print output
#32
ajasja
closed
3 years ago
0
init_complete_score should accept a filename paramter
#33
ajasja
closed
3 years ago
0
Solutions of full4096 are wrong
#34
ajasja
closed
3 years ago
5
Implement the scoring function in C++
#35
dancsi
closed
3 years ago
1
No parallelization occurs
#36
ajasja
closed
3 years ago
3
Building with -O3
#37
ajasja
closed
3 years ago
1
Committing interaction matrices to the repo
#38
ajasja
closed
3 years ago
4
Also add cutoff constants as command line parameters
#39
ajasja
closed
3 years ago
2
Implement also the serial mcqd solver
#40
ajasja
closed
3 years ago
5
How to switch between finding homodimers, heterodimers or both?
#41
ajasja
closed
3 years ago
2
Update build instructions
#42
ajasja
closed
3 years ago
4