dandi dandisets-healthstatus issues

dandi / dandisets-healthstatus

Healthchecks of dandisets and support libraries (pynwb and matnwb)

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FOI: I tuned up caching for davfs2

#78 yarikoptic opened 3 weeks ago
0
Replace datalad-fuse with davfs2

#77 jwodder closed 3 weeks ago
12
Switch deployment on drogon to use dandidav + davfs2 instead of datalad-fuse

#76 yarikoptic closed 3 weeks ago
2
Investigate timeouts for a good number of assets

#75 yarikoptic opened 1 month ago
1
Only update public Dandiset datasets

#74 jwodder closed 3 months ago
3
Skip embargoed datasets somehow?

#73 yarikoptic closed 3 months ago
6
Do store/expose logs for (at least failed) runs.

#72 yarikoptic opened 4 months ago
2
Needs to save periodically: run.sh runs for the full run ATM

#71 yarikoptic opened 4 months ago
0
"Inject" state of a dandiset also into a dandiset github repo

#70 yarikoptic opened 4 months ago
0
[gh-actions](deps): Bump codecov/codecov-action from 3 to 4

#69 dependabot[bot] closed 5 months ago
1
Move shell scripts to `tools/`

#68 jwodder closed 5 months ago
5
Add benchmarking of various mounting strategies

#67 jwodder closed 3 weeks ago
37
MatNWB installation steps still needed?

#65 jwodder opened 5 months ago
3
Compare performance of webdav+davfs2, webdav+webdavfs, and datalad-fuse

#66 jwodder closed 3 weeks ago
38
Cleanup

#64 jwodder closed 6 months ago
1
Add versions summary to top of README

#63 jwodder closed 6 months ago
2
Add summary over versions of libraries

#62 yarikoptic closed 6 months ago
4
[gh-actions](deps): Bump actions/setup-python from 4 to 5

#61 dependabot[bot] closed 6 months ago
1
Update for Pydantic v2 and anyio v4

#60 jwodder closed 7 months ago
2
Test against Python 3.12

#59 jwodder closed 7 months ago
4
mypy: Set `ignore_missing_imports = False`

#58 jwodder closed 7 months ago
1
[gh-actions](deps): Bump actions/checkout from 3 to 4

#57 dependabot[bot] closed 7 months ago
0
Use Dependabot to update GitHub Actions versions

#56 jwodder closed 7 months ago
0
Log more information about test : versions and code?

#55 yarikoptic opened 11 months ago
0
README.md summary seems to be off for matnwb_nwbRead

#54 yarikoptic closed 11 months ago
0
datalad-fuse via fsspec caching is too slow - needs a solution

#53 yarikoptic opened 1 year ago
3
crashed with "Event loop is closed"

#52 yarikoptic closed 11 months ago
1
Support .zarr testing

#51 yarikoptic opened 1 year ago
0
dandiset id should be forced into str while dumped into yaml

#50 yarikoptic closed 1 year ago
2
test-files: Properly compute asset paths when using `--save-results`

#49 jwodder closed 1 year ago
2
Strip linenos from `versions` dicts when loading

#48 jwodder closed 1 year ago
2
Doesn't actually store updated status for a file while running test-files

#47 yarikoptic closed 1 year ago
0
Stores some `_lineno` within `versions:` record

#46 yarikoptic closed 1 year ago
0
RF: unify into dandisets-healthstatus on CLI and references/name

#45 yarikoptic closed 1 year ago
0
Add `--mode` option

#44 jwodder closed 1 year ago
2
--mode all,random-asset

#43 yarikoptic closed 1 year ago
16
Add rudimentary webnwb testing

#42 yarikoptic opened 1 year ago
5
ENH: dereference symlinks while running file

#41 yarikoptic closed 1 year ago
1
Add MATNWB_SAVEDIR also into MATLABPATH

#40 yarikoptic closed 1 year ago
1
Add `healthstatus test-files <testname> <file> ...` command

#39 jwodder closed 1 year ago
2
add command to run individual test on given file(s)

#38 yarikoptic closed 1 year ago
2
Ignore `dandiset.yaml`

#37 jwodder closed 1 year ago
2
completely skip testing dandiset.yaml for now

#36 yarikoptic closed 1 year ago
0
Store runtime information

#35 jwodder closed 1 year ago
2
Link to individual lines in `status.yaml` from second README table

#34 jwodder closed 1 year ago
2
Record details on untested assets

#33 jwodder closed 1 year ago
2
Align `run.sh` with version on drogon

#32 jwodder closed 1 year ago
3
Flush matnwb tarball before untarring

#31 jwodder closed 1 year ago
2
Split command into "check" and "report" subcommands

#30 jwodder closed 1 year ago
2
Report on runtimes

#29 jwodder closed 1 year ago
5