issues
search
dantaki
/
SV2
Support Vector Structural Variation Genotyper
58
stars
11
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error: Too many open files
#35
juanjingmiao
opened
1 year ago
0
Genotype and merge VCFs from different samples
#34
Talo07
opened
1 year ago
0
NotFittedError: This MultinomialNB instance is not fitted yet. Call 'fit' with appropriate arguments before using this estimator.
#33
aulaelf
opened
2 years ago
1
Added reference fasta paths for use with crams.
#32
mchowdh200
closed
4 years ago
0
False positive findings of de novo calling
#31
WeiCSong
opened
4 years ago
0
module 'ntpath' has no attribute 'walk'
#30
Totalstorm
opened
5 years ago
1
de novo
#29
callaL
closed
5 years ago
1
setting the reference
#28
fritzsedlazeck
closed
5 years ago
2
Allow specification of custom classifier paths.
#27
holtgrewe
closed
5 years ago
0
Dependencies missing from setup.py?
#26
holtgrewe
opened
5 years ago
4
Is combined multiple samples same as joint calling
#25
justme66
closed
5 years ago
10
reasonable prefiltering of CNV calls
#24
furbelows
closed
5 years ago
1
Preprocessing with read_count==0 and time-consuming problem
#23
justme66
closed
5 years ago
3
runtime and one chromosome test
#22
justme66
closed
6 years ago
2
stringent de novo filter explanation
#21
justme66
closed
6 years ago
2
strelka2 compatibility
#20
carleshf
closed
6 years ago
1
Skipping bad entry
#19
carleshf
closed
6 years ago
1
Error message does not output
#18
sunnyzxh
closed
5 years ago
5
Argument -s/-seed: invalid int value: 'np'
#17
carleshf
closed
6 years ago
8
No error and no output for sv2
#16
carleshf
closed
6 years ago
2
Is SV2 suitable for plant genomes?
#15
songtaogui
closed
6 years ago
2
NOALT filter
#14
Madelinehazel
closed
6 years ago
1
Users can now specify the config INI file
#13
holtgrewe
closed
6 years ago
0
Fixing VCF format problems
#12
holtgrewe
closed
6 years ago
0
Moving INFO/DENOVO_FILTER into FORMAT?
#11
holtgrewe
closed
6 years ago
2
Running without install step (aka "config on the command line")
#10
holtgrewe
closed
6 years ago
2
Invalid generated VCF
#9
holtgrewe
closed
6 years ago
1
ValueError: could not create iterator for region 'X:2745094-2745111'
#8
Varunachander
closed
6 years ago
3
sv2 python IndexError
#7
mesnger
closed
6 years ago
7
some questions on using this tool
#6
ytguojian
closed
6 years ago
1
add python_requires to setup.py
#5
timothymillar
closed
6 years ago
1
Question about output
#4
fritzsedlazeck
closed
6 years ago
12
Test data run
#3
fritzsedlazeck
closed
6 years ago
2
What about a bioconda package?
#2
holtgrewe
closed
6 years ago
12
genotyping error - sklearn: NotFittedError: This SVC instance is not fitted yet
#1
amaiacc
closed
7 years ago
6