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databio
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gtars
Performance-critical tools to manipulate, analyze, and process genomic interval data. Primarily focused on building tools for geniml - our genomic machine learning python package.
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Hierarchical tokenizers
#27
nleroy917
opened
3 weeks ago
1
Rename repository to `gtars`
#26
nleroy917
closed
3 weeks ago
0
Hierarchical universes and a tokenizer config
#25
nleroy917
opened
1 month ago
0
Release `v0.0.13` -- Add fragment file tokenizer
#24
nleroy917
closed
1 month ago
1
Implement a basic fragment file tokenizer
#23
nleroy917
closed
1 month ago
0
Fix pything bindings tokenization performance issues
#22
nleroy917
closed
1 month ago
0
Python bindings memory leak and performance issues
#21
nleroy917
closed
1 month ago
1
PanicException during tokenization
#20
ClaudeHu
opened
1 month ago
9
Tokenize all the things - genomic omni-model
#19
nleroy917
opened
1 month ago
0
Python bindings wont build for linux `aarch64`
#18
nleroy917
closed
1 month ago
9
Soft tokenizer
#17
nleroy917
closed
1 month ago
0
Release `v0.0.12`
#16
nleroy917
closed
1 month ago
2
Convert to workspace
#15
nleroy917
opened
2 months ago
0
Implement an `AnnData` tokenizer
#14
nleroy917
opened
2 months ago
0
Better tokenization API
#13
nleroy917
closed
2 months ago
1
Implement a `return_tensors="pt"` function for the Tokenizers
#12
nleroy917
opened
2 months ago
1
Dev uniwig
#11
donaldcampbelljr
opened
3 months ago
23
Inconsistent region numbers
#10
gtzheng
opened
4 months ago
4
Dev igd
#9
donaldcampbelljr
opened
5 months ago
0
add AIList and bindings
#8
edward9065
closed
6 months ago
0
Implement a soft tokenizer
#7
nleroy917
opened
7 months ago
1
Merge master changes into dev branch
#6
edward9065
closed
7 months ago
0
The `TokenizedRegionSet` needs to have a `to_ids()` function on it
#5
nleroy917
opened
7 months ago
1
Tokenizers should sort universe files before creating `region_to_id` maps
#4
nleroy917
opened
7 months ago
0
Core utilities
#3
nleroy917
closed
7 months ago
6
Implement some core utils
#2
nleroy917
opened
7 months ago
0
Implement `uniwig`
#1
nleroy917
opened
8 months ago
10