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datajoint-company
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IBL-pipeline
DataJoint pipeline for IBL project
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Standardize formatting and fix `session_start_time`
#81
iamamutt
opened
2 years ago
0
refactor for use without local alyx
#80
iamamutt
closed
2 years ago
0
add scripts for data publishing - Feb 2022
#79
ttngu207
closed
2 years ago
3
Tag fix and script changes
#78
iamamutt
closed
2 years ago
0
minor bugfix
#77
ttngu207
closed
2 years ago
0
Tag and SessionTag
#76
ttngu207
closed
2 years ago
0
terminate and job updates
#75
iamamutt
closed
2 years ago
0
Image building changes
#74
iamamutt
closed
2 years ago
0
Docker/Alyx/ONE updates
#73
iamamutt
closed
2 years ago
0
include mechanism for processing unfinished work from previous jobs
#72
ttngu207
closed
2 years ago
0
Updates to docker image to reflect changes in Alyx
#71
iamamutt
closed
2 years ago
0
A few additional tweaks to get the ingestion working with new "alyx reloaddb" mechanism
#70
ttngu207
closed
3 years ago
0
version 2.4 docker-compose.yml
#69
iamamutt
closed
3 years ago
0
Refactor Docker containers for new ingestion and ibl_pipeline code
#68
iamamutt
closed
3 years ago
0
More docker stuff and sync with new ingestion
#67
iamamutt
closed
3 years ago
0
Add ingestion of `DataSet` and `FileRecord` - Add ordering to the copying of real tables - Improve ingestion speed
#66
ttngu207
closed
3 years ago
0
Standalone docker alyx
#65
iamamutt
closed
3 years ago
0
New ingestion (merge docker folders)
#64
iamamutt
closed
3 years ago
0
histology ingestion | update to ONE 2 | ingestion speed improvements
#63
ttngu207
closed
3 years ago
0
New ingestion + containerization
#62
ttngu207
closed
3 years ago
0
update local access instructions
#61
iamamutt
closed
3 years ago
0
some `session_narative` are too long for `varchar(2048)`
#60
ttngu207
opened
3 years ago
0
IBL DataJoint documentation improvement
#59
ttngu207
opened
3 years ago
1
new-ingestion: docker-compose with 2 services
#58
ttngu207
opened
3 years ago
0
new-ingestion: fix entry point script to download and bring up sql_dump dynamically
#57
ttngu207
opened
3 years ago
0
New ingestion
#56
ttngu207
closed
3 years ago
0
bugfix/improvement on DJ pipeline for daily ingestion
#55
ttngu207
closed
3 years ago
0
completed DJ pipeline code up to `autoprocess.process_postgres()`
#54
ttngu207
closed
3 years ago
0
New ingestion
#53
iamamutt
closed
3 years ago
0
remove `ephys.ProbeInsertion` restriction in populating wheel data
#52
ttngu207
closed
3 years ago
0
version lock datajoint
#51
shenshan
closed
3 years ago
0
Several helper functions and bug fixes in the main routine
#50
shenshan
closed
3 years ago
0
New ingestion
#49
shenshan
closed
3 years ago
0
Load single sql dump to DataJoint alyxraw
#48
shenshan
closed
3 years ago
0
Work around to deal with brainbox bug; fix bug on PETH computing for events stim on and feedback
#47
shenshan
closed
3 years ago
0
Notebooks for JupyterHubs
#46
shenshan
closed
3 years ago
0
Release selected ephys data to public database
#45
shenshan
closed
3 years ago
0
Add tables ProbeBrainRegion and DepthBrainRegion/ sql commands to create histology tables that require general_cs collation
#44
shenshan
closed
3 years ago
1
First version of spinning brain generation; Fix a few bugs on ephys plotting; process wheel only for last 30 days.
#43
shenshan
closed
3 years ago
0
Add functions to compare probe insertion/qc entries in alyx and in dj; Small bug fixes for ephys plottings
#42
shenshan
closed
3 years ago
0
Auto-update the probe insertion qc; update probe insertion uuid
#41
shenshan
closed
3 years ago
0
Small bug fix, lock datajoint version number 0.12, add wheel to cron job
#40
shenshan
closed
3 years ago
0
Behavior bug fixes/Break transaction for big ingestions/Histology tables for resolved probe trajectories/Check data completeness of ProbeInsertions/Workshop tutorials
#39
shenshan
closed
3 years ago
0
ingest-entrypoint.sh: adjust mkdb/rotatedb for 2 database usage
#38
ixcat
closed
3 years ago
0
initial alyx-based ingest environment scaffolding
#37
ixcat
closed
3 years ago
0
Upgrade ingestion mechanism for speeding up + public ingestion + histology pipeline reimplement + qc tables and ingestion routine
#36
shenshan
closed
3 years ago
0
ClusterBrainLocation and SessionBrainLocation
#35
shenshan
closed
4 years ago
0
Add movement related figures into the pipeline and implement the channel/cluster assignments of the
#34
shenshan
closed
4 years ago
0
more Ephys plotting
#33
shenshan
closed
4 years ago
0
Update JupyterHub contents per request/PSTH raster updates
#32
shenshan
closed
4 years ago
0
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