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datajoint
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workflow-miniscope
Example DataJoint workflow for miniscope calcium imaging analysis with CaImAn
https://datajoint.com/docs
MIT License
2
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9
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Add quality metrics notebook and pytests
#34
kabilar
closed
1 year ago
0
Add GitHub Actions workflows
#33
kabilar
closed
1 year ago
1
Revise pytesting, update docker, add QC notebook
#32
CBroz1
closed
1 year ago
0
Linting and various cleanup items
#31
CBroz1
closed
1 year ago
0
Update README.md
#30
tdincer
closed
1 year ago
0
Updated README
#29
kushalbakshi
closed
2 years ago
1
Add docstrings
#28
CBroz1
closed
2 years ago
0
Relocate `recursive_search` and blackify
#27
CBroz1
closed
2 years ago
0
Docker compose revise volume mapping
#26
CBroz1
closed
1 year ago
0
Fix segmentations and deconvolved traces for example data in `05-explore` notebook
#25
kabilar
opened
2 years ago
0
Add integration tests for `analysis.py`
#24
CBroz1
closed
1 year ago
1
Standard integration tests, PEP8, docker adjustments
#23
CBroz1
closed
2 years ago
8
Add trialized data, tables, and notebook
#22
kabilar
closed
2 years ago
0
Update pipeline generation tests
#21
kabilar
closed
2 years ago
0
Update `05-explore` Jupyter notebook
#20
kabilar
closed
2 years ago
0
Add `04-automate` Jupyter notebook
#19
kabilar
closed
1 year ago
0
Update pipeline declaration, ingestion script, and notebooks
#18
kabilar
closed
2 years ago
1
Update README
#17
kabilar
closed
2 years ago
0
Add issue templates
#16
kabilar
closed
2 years ago
1
Tutorial in video format
#15
kabilar
closed
2 years ago
1
Update standard workflow scripts
#12
kabilar
closed
2 years ago
0
Create docker-compose file for integration tests
#11
kabilar
closed
2 years ago
0
Create `GitHub Actions` for integration tests
#10
kabilar
closed
2 years ago
1
update __init__.py
#9
davidgodinez
closed
3 years ago
4
Create integration tests with pytest
#8
kabilar
closed
2 years ago
0
Test in DataJoint cloud environment
#7
kabilar
closed
1 year ago
1
Miniscope Beta Release
#6
kabilar
closed
2 years ago
0
Release Example Datasets
#5
kabilar
closed
2 years ago
2
Miniscope Alpha Release
#4
kabilar
closed
2 years ago
0
Add instructions to `README` for setting up a local database
#3
kabilar
closed
2 years ago
1
Add support for `Miniscope-DAQ-V3` and `MiniscopeAnalysis`. Updated Jupyter Notebooks with detailed explanations.
#2
kabilar
closed
3 years ago
3
Update README - `calcium-imaging` -> `miniscope`
#1
ttngu207
closed
3 years ago
0
Add example dataset for MiniscopeAnalysis package
#13
kabilar
closed
2 years ago
1
Add example dataset for Miniscope-DAQ V4 acquisition system
#14
kabilar
closed
1 year ago
2