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david-barnett
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microViz
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
https://david-barnett.github.io/microViz/
GNU General Public License v3.0
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Heatmap error: heat_palette() palette argument must be either a: vector of colours, or....
#38
Leran10
closed
1 year ago
1
Error in if (!all(x >= 0)) stop("Negative distances not supported!") : missing value where TRUE/FALSE needed
#37
Leran10
closed
1 year ago
3
Feature request - order taxa in comp_barplot alphabetically
#36
emilyvansyoc
closed
1 year ago
4
could not find function "sampleAnnotation" in v0.90
#35
emilyvansyoc
closed
2 years ago
2
tax_model checks equality with corncob::bbdml without checking if corncob installed...
#34
david-barnett
closed
2 years ago
1
ord_explore plotting error with R 4.1 on windows
#33
david-barnett
closed
2 years ago
2
heat_grid default lwd of 0.5 not respected on png device
#32
david-barnett
closed
1 year ago
0
ord_explore shape errors
#29
david-barnett
closed
3 years ago
1
girafe_html
#28
atgustin
closed
2 years ago
2
Incomplete citation of microbiome R package
#27
marypiper
closed
3 years ago
2
Statement of need
#26
marypiper
closed
3 years ago
1
RShiny app problems
#25
marypiper
closed
3 years ago
2
ord_explore button to get code for ord_plot
#22
david-barnett
closed
3 years ago
1
ord_explore stat_ellipse button for when colour is set to a variable
#21
david-barnett
closed
3 years ago
1
ps_calc_dominant - for add dominant taxon for each sample to phyloseq sample_data
#20
david-barnett
closed
2 years ago
1
easy way to generate fixed palette for taxa
#16
david-barnett
closed
1 year ago
7
tax_info convenience function?
#15
david-barnett
closed
2 years ago
0
cran submission to-do list
#13
david-barnett
closed
1 year ago
0
vignette for package ?microViz
#12
david-barnett
closed
3 years ago
1
better explanation of dist and ord theory in fun help pages
#11
david-barnett
closed
2 years ago
1
tax_model support multiple univariate tests?
#10
david-barnett
closed
1 year ago
0
tax_top function
#9
david-barnett
closed
3 years ago
1
comp_barplot groups in "other" category
#8
david-barnett
closed
3 years ago
1
extract ps_cor as helper inside cor_heatmap
#7
david-barnett
closed
1 year ago
0
ggirafe interactivity on ord_explore
#6
david-barnett
closed
1 year ago
1
ancombc for tax_model
#5
david-barnett
closed
1 year ago
1
corncob via cran
#4
david-barnett
closed
3 years ago
1
umap for ord_plot
#2
david-barnett
closed
1 year ago
0
generalise model_tax_corncob to any formula-based stats method
#1
david-barnett
closed
3 years ago
1
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