david-barnett microViz issues

david-barnett / microViz

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

https://david-barnett.github.io/microViz/

GNU General Public License v3.0

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issues

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How to understand the "grouping" parameter in taxatree_stats_p_adjust() function?

#42 Leran10 closed 2 years ago
1
comp_barplot() option not to scale to 1

#41 fconstancias closed 2 years ago
2
taxatree_models verbose arg options need explanation

#40 david-barnett closed 2 years ago
0
Beta-binomial regression example error: Error in (function (formula, phi.formula, data, link = "logit", phi.link = "logit", : Model could not be optimized! Try changing initializations or simplifying your model.

#39 Leran10 closed 2 years ago
1
Heatmap error: heat_palette() palette argument must be either a: vector of colours, or....

#38 Leran10 closed 2 years ago
1
Error in if (!all(x >= 0)) stop("Negative distances not supported!") : missing value where TRUE/FALSE needed

#37 Leran10 closed 2 years ago
3
Feature request - order taxa in comp_barplot alphabetically

#36 emilyvansyoc closed 2 years ago
4
could not find function "sampleAnnotation" in v0.90

#35 emilyvansyoc closed 2 years ago
2
tax_model checks equality with corncob::bbdml without checking if corncob installed...

#34 david-barnett closed 3 years ago
1
ord_explore plotting error with R 4.1 on windows

#33 david-barnett closed 3 years ago
2
heat_grid default lwd of 0.5 not respected on png device

#32 david-barnett closed 2 years ago
0
ord_explore shape errors

#29 david-barnett closed 3 years ago
1
girafe_html

#28 atgustin closed 3 years ago
2
Incomplete citation of microbiome R package

#27 marypiper closed 3 years ago
2
Statement of need

#26 marypiper closed 3 years ago
1
RShiny app problems

#25 marypiper closed 3 years ago
2
ord_explore button to get code for ord_plot

#22 david-barnett closed 3 years ago
1
ord_explore stat_ellipse button for when colour is set to a variable

#21 david-barnett closed 3 years ago
1
ps_calc_dominant - for add dominant taxon for each sample to phyloseq sample_data

#20 david-barnett closed 3 years ago
1
easy way to generate fixed palette for taxa

#16 david-barnett closed 2 years ago
7
tax_info convenience function?

#15 david-barnett closed 3 years ago
0
cran submission to-do list

#13 david-barnett closed 2 years ago
0
vignette for package ?microViz

#12 david-barnett closed 3 years ago
1
better explanation of dist and ord theory in fun help pages

#11 david-barnett closed 3 years ago
1
tax_model support multiple univariate tests?

#10 david-barnett closed 2 years ago
0
tax_top function

#9 david-barnett closed 3 years ago
1
comp_barplot groups in "other" category

#8 david-barnett closed 3 years ago
1
extract ps_cor as helper inside cor_heatmap

#7 david-barnett closed 2 years ago
0
ggirafe interactivity on ord_explore

#6 david-barnett closed 2 years ago
1
ancombc for tax_model

#5 david-barnett closed 2 years ago
1
corncob via cran

#4 david-barnett closed 3 years ago
1
umap for ord_plot

#2 david-barnett closed 2 years ago
0
generalise model_tax_corncob to any formula-based stats method

#1 david-barnett closed 3 years ago
1