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david-barnett
/
microViz
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
https://david-barnett.github.io/microViz/
GNU General Public License v3.0
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No change in #/Taxa when trying tax_select?
#102
david-barnett
closed
1 year ago
5
let tax_select actually use a list for tax list
#100
david-barnett
closed
1 year ago
1
tax_select using a list for input?
#99
carmennns2
closed
1 year ago
2
Calculating gunifrac on the fly in ord_explore gives no indication that it is working
#98
david-barnett
opened
1 year ago
0
Tax fix with a minimum length of zero still removes/replaces empty strings
#97
david-barnett
opened
1 year ago
0
testing development of next version
#96
david-barnett
closed
1 year ago
0
Interactive plot and it turns to black
#94
dabinj
closed
1 year ago
0
example of tax_mutate for regex-based pre-cleaning of tax_table before tax_fix
#93
david-barnett
opened
2 years ago
0
shao19 example data family rank contains orders
#92
david-barnett
closed
1 year ago
1
Workshop
#91
david-barnett
closed
2 years ago
1
fix bug that caused loss of node stats after taxatree_labels use
#90
david-barnett
closed
2 years ago
1
FIX: taxatree_plotkey layout bug introduced probably in 0.10.2
#89
david-barnett
closed
2 years ago
1
Links broken in Readme.md on github.com only
#87
davised
closed
2 years ago
1
Release check
#86
david-barnett
closed
2 years ago
2
Release check
#85
david-barnett
closed
2 years ago
1
GHA check on ggplot2 336 and ggiraph 083
#84
david-barnett
closed
2 years ago
1
testing on ggplot3.3.6
#83
david-barnett
closed
2 years ago
0
dist_seriate
#82
david-barnett
opened
2 years ago
0
fixes for a few small taxatree plot bugs
#81
david-barnett
closed
2 years ago
1
taxatree_plotkey emits dplyr dataframe warnings, originating from taxatree_plot_labelsQuadrant
#80
david-barnett
closed
2 years ago
1
tax_sort_ord should be able to sort taxa in a psExtra
#79
david-barnett
opened
2 years ago
0
tax_top can't actually "use counts" because it uses ps_get internally
#78
david-barnett
closed
2 years ago
1
tax_transform add argument doesn't accept halfmin
#77
david-barnett
closed
2 years ago
1
Testing new preserve argument in tax_agg
#75
david-barnett
opened
2 years ago
3
version 0.10.0
#74
david-barnett
closed
2 years ago
1
Tax model univariable clean
#73
david-barnett
closed
2 years ago
0
some updates, pull request for full CI
#71
david-barnett
closed
2 years ago
1
Error in dist_calc
#69
veverusha
closed
2 years ago
2
tax_rename pad_digits doesn't allow numeric
#68
david-barnett
closed
2 years ago
1
Installation from official source
#66
SilasK
closed
2 years ago
6
Can I use microViz with only relative abundance
#64
SilasK
closed
2 years ago
2
Tax model allow univariable models
#63
david-barnett
closed
2 years ago
1
add support for rclr and robust.aitchison
#62
david-barnett
closed
2 years ago
0
Error in if (!all(x >= 0)) stop("Negative distances not supported!") :
#60
lcamVz
closed
2 years ago
3
Fast Unifrac
#59
pedrocr83
closed
2 years ago
2
labeling issue with comp_barplot() and facet_grid()
#58
laurendaddi
closed
2 years ago
2
Cannot install from github, gives timeout error.
#57
jveix
closed
2 years ago
3
Support for Robust CLR and Robust Aitchison
#56
nr0cinu
closed
2 years ago
1
ord_get() extract Eigenvalues for all the samples
#54
Leran10
closed
2 years ago
0
dist_calc() Error
#53
Leran10
closed
2 years ago
2
fix bug allowing lmer to work in tax_model
#52
david-barnett
closed
2 years ago
4
Mixed models using `taxatree_models()`
#51
fconstancias
opened
2 years ago
2
Hierarchical clustering in relative abundances plots
#50
BrigittevdG
closed
2 years ago
2
p values in correlation heatmaps
#49
BrigittevdG
closed
2 months ago
6
new version of ps_dedupe
#48
david-barnett
closed
2 years ago
1
heatmaps can't show only one variable/sample/taxon without suppressing seriation
#47
david-barnett
closed
2 years ago
1
Errors making correlation heatmaps
#46
BrigittevdG
closed
2 years ago
7
ps_dedupe removes all rows when using multiple variables
#45
avancise
closed
2 years ago
4
Sorting taxa by abundance per sample in comp_barplot
#44
rsak-384
closed
2 years ago
6
Error in (function (edges, n = max(edges), directed = TRUE) : At type_indexededgelist.c:117 : cannot create empty graph with negative number of vertices, Invalid value
#43
Leran10
closed
2 years ago
3
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