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davismcc
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archive-scater
An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
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Problem with runPCA function
#135
lvkunz
closed
7 months ago
2
unused argument
#134
ryf0810
opened
1 year ago
1
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"SCESet"’
#133
cguzzo
closed
7 years ago
2
Removed self from maintainer list because CHECK complains.
#132
LTLA
closed
7 years ago
2
plotExpression doesn't work properly
#131
LTLA
closed
7 years ago
2
Restored newSCESet for back-compatibility
#130
LTLA
closed
7 years ago
0
Fixed updateSCESet for renamed "exprs"
#129
LTLA
closed
7 years ago
0
Switched from 'exprs' to 'logcounts' internally.
#128
LTLA
closed
7 years ago
0
Revise vignette
#127
davismcc
closed
7 years ago
1
Add capabilities for interactive plots
#126
davismcc
closed
7 years ago
1
Add plotScater to plotQC options
#125
davismcc
closed
7 years ago
1
Future updates
#124
LTLA
closed
7 years ago
2
Future updates
#123
LTLA
closed
7 years ago
1
More future updates
#122
LTLA
closed
7 years ago
1
Number of dimensions error in calculateQCMetrics
#121
samvidav
closed
7 years ago
2
plotExplanatoryVariables should automatically remove zero variances
#120
LTLA
closed
7 years ago
1
using feature IDs with "." in getBMFeatureAnnos()
#119
LindaDansereau
closed
7 years ago
2
plotExpression x-axis labels
#118
julien-roux
closed
7 years ago
2
Future updates
#117
LTLA
closed
7 years ago
0
Add cellular detection rate by batch plot for QC
#116
davismcc
closed
7 years ago
1
Cannot allocate vector of size when running scater_gui
#115
ericvon11
closed
7 years ago
6
Maximum number of cells?
#114
wikiselev
closed
7 years ago
5
plotHighestExprs
#113
weizhiting
closed
7 years ago
1
Winding back C++
#112
LTLA
closed
7 years ago
0
different clustering results with rtsne() and plotTSNE() function
#111
cmgraef
closed
7 years ago
2
exprs and cpm are different
#110
galib36
closed
7 years ago
14
Reading mtx (matrix market) files?
#109
vals
closed
7 years ago
2
comment on the default perplexity setting for plotTSNE
#108
friedue
closed
7 years ago
1
minor comment for the documentation of normalize()
#107
friedue
closed
7 years ago
1
MAGIC adaptive kernel
#106
dvdijk
closed
7 years ago
5
Add function for feature annotation from `org.Xx.eg.db` objects
#105
davismcc
closed
7 years ago
1
getBMFeatureAnnos error
#104
wikiselev
closed
7 years ago
8
plotQC documentation
#103
rspreafico
closed
7 years ago
1
Add RLE function/plots
#102
davismcc
closed
7 years ago
1
exprs documentation
#101
rspreafico
closed
7 years ago
1
What is the difference between built-in normalization in scater 1.0.4 and 1.2.0?
#100
sozzznanie
closed
7 years ago
5
NormaliseExprs with non-logged values
#99
jenzopr
closed
7 years ago
2
plotPhenoData - issue with changing size and theme_size
#98
dat4git
closed
7 years ago
4
plotReducedDim.SCESet: colour by exprs/norm_exprs/... ?
#97
kevinrue
closed
7 years ago
3
correct minor bug subsetting data.frame
#96
daskelly
closed
7 years ago
2
Fix ncomponents bug in plotTSNE
#95
lazappi
closed
7 years ago
2
Getting more done in GitHub with ZenHub
#94
davismcc
closed
7 years ago
0
Violin plots interact weirdly with shape_by in plotExpression
#93
LTLA
closed
7 years ago
1
Added recentering warning in normalize docs.
#92
LTLA
closed
7 years ago
5
Improved documentation to warn against comparing normalized values
#91
LTLA
closed
7 years ago
1
tximport 1.3.5 can import .h5a kallisto abundance files
#90
mikelove
closed
7 years ago
2
Error: featureNames differ between assayData and featureData
#89
zhiyhu
closed
7 years ago
4
Allowed nexprs to subset by column, renamed its arguments.
#88
LTLA
closed
7 years ago
2
Migrated spike-in machinery from scran to scater.
#87
LTLA
closed
7 years ago
1
Bug fix for calcAverage.
#86
LTLA
closed
7 years ago
0
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