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deeptools
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deepTools
Tools to process and analyze deep sequencing data.
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v3.5.5
#1295
WardDeb
closed
8 months ago
0
github action changes for python 3.7 drop
#1294
WardDeb
closed
8 months ago
0
Metagene plot with cis and trans chip-seq signals
#1293
pterzian
closed
8 months ago
0
plotHeatmap.py fails because direct matplotlib.tight_layout use was deprecated in matplotlib 3.6.0
#1292
eernst
closed
9 months ago
1
ERROR: Could not build wheels for deeptoolsintervals, py2bit, which is required to install pyproject.toml-based projects
#1291
Heather1999
closed
7 months ago
11
plotFingerprint bigwig support
#1290
annajbott
opened
9 months ago
1
Why does alignmentSieve output bam files with no sequence / base quality?
#1289
chklee30
closed
8 months ago
1
Can I directly ajdust the height ratio of the subplots when using several bed files?
#1288
Myrtle-bio
closed
8 months ago
1
Overcommitted cpus
#1287
WardDeb
closed
10 months ago
0
deepTools-3.5.4 :: estimateScaleFactor :: typo
#1286
EricDeveaud
closed
10 months ago
1
effective genome sizes in docs
#1285
WardDeb
closed
10 months ago
0
Effective genome size T2T-CHM13 reference genome
#1284
smsamin
closed
10 months ago
2
A colormap named "rocket" is already registered.
#1283
wahaha233333
closed
11 months ago
1
drop deepblue support, heatmapper constrained layout,
#1282
WardDeb
closed
10 months ago
0
bamCoverage: error: argument --outFileName/-o: xxdir/sss/ddd/bugwig.bw file can't be opened for writing
#1281
Kiliankleemann
closed
8 months ago
1
deeptools k-means clustering
#1280
suderiss
closed
8 months ago
1
correctGCbias error
#1279
LavanyaRanganathan95
closed
8 months ago
2
plotHeatmap set multiple yMax values error
#1278
wddyzxxx
closed
8 months ago
1
Docs pyreqs
#1277
WardDeb
closed
1 year ago
0
Heatmap gene deletion issues
#1276
feasiblee
closed
12 months ago
1
AttributeError: module 'numpy' has no attribute 'float'.
#1275
jeffwhite81
closed
1 year ago
1
Why enrichment of TSS and TES region are similar when using scale-region
#1274
haojin9288
opened
1 year ago
1
Question about different information included in the input bed file would generate totally different Metagene Plot
#1273
lillianj97
opened
1 year ago
0
Display the name of genes
#1272
nilanjana1996
opened
1 year ago
0
Current documentation is missing information
#1271
aydemiro
closed
1 year ago
1
issue with multibigwigsummary
#1270
liuyu988
opened
1 year ago
0
There is no setup.py file
#1269
bio-Tao
closed
1 year ago
2
bug in alignmentSieve --ATACshift
#1268
njwehi
opened
1 year ago
0
`--skipNonCoveredRegions`/`--skipNAs` not working for `bigwigCompare` in sparse data
#1267
jantusan
opened
1 year ago
0
galaxy binary version 3.5.4
#1266
WardDeb
closed
1 year ago
0
galaxy version update 3.5.4
#1265
WardDeb
closed
1 year ago
0
version 3.5.4
#1264
WardDeb
closed
1 year ago
3
version tag boost
#1263
WardDeb
closed
1 year ago
0
Develop
#1262
WardDeb
closed
1 year ago
0
strip v from tag check
#1261
WardDeb
closed
1 year ago
0
matplotlib, bwAvg & pypi cicd
#1260
WardDeb
closed
1 year ago
0
Mpl versioncap
#1259
WardDeb
closed
1 year ago
0
Do not use Tick.label
#1258
lldelisle
closed
1 year ago
2
Fix error handling + cases where with bigwigAverage with more than 2 bigwigs
#1257
lldelisle
closed
1 year ago
3
plotCorrelation - ValueError: rotation must be 'vertical', 'horizontal' or a number, not 45
#1256
gremame
closed
1 year ago
2
alignmentSieve: Adding the option to keep the original tags in the processed BAM
#1255
samuelruizperez
opened
1 year ago
0
deepTools issue with deepBlue
#1254
liuweihanty
closed
8 months ago
6
Problem with inconsistent lines output from K-means clustering
#1253
magnusdottir
opened
1 year ago
0
Develop
#1252
WardDeb
closed
1 year ago
0
Docs
#1251
WardDeb
closed
1 year ago
0
problem with methylation BigWig
#1250
gyanmishra
opened
1 year ago
0
bamCoverage --extendReads, defaultFragmentLength can be 0 causing program to fail
#1249
Alexwestbrook
opened
1 year ago
0
--filterRNAstrand usage for alignmentSieve is missleading
#1248
VeredKunik
opened
1 year ago
0
JSD round to 15 decimals
#1247
WardDeb
closed
1 year ago
0
round getJSDcommon to 16 decimals
#1246
WardDeb
closed
1 year ago
0
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