delt0r msms issues - Githubissues

delt0r / msms

A coalsecent simulator with selection

www.mabs.at/ewing/msms

17 stars 7 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

How build msms from sources?

#55 popgenomics opened 1 year ago
2
-Sc argument not working as expected

#54 ornobalam opened 1 year ago
0
Added New Bottleneck Type

#53 swamidass opened 3 years ago
1
Rounding issue with msms segregating site positions

#52 pandolfa opened 4 years ago
2
Second example from quickstart page fails

#51 winni2k opened 4 years ago
1
Support Python 3 as python executable

#50 niemasd opened 6 years ago
2
how to add instantaneous max lineages event?

#49 swamidass opened 6 years ago
0
-Smu, -ooC, frequency of introduction

#48 signor-molevol opened 7 years ago
0
The link is broken

#47 mortonjt opened 7 years ago
1
-g flag does not work when set before -n flag, problem with example in manual

#46 stephenrong opened 8 years ago
0
Clarification on local LD and haplotype structure when using the -SI flag

#45 ghost opened 8 years ago
0
Is there any way to increase the precision of position floats?

#44 stephenrong opened 8 years ago
0
Problem with frequency trajectory when simulating with large adaptive theta and small selection coefficint

#43 ngarud opened 8 years ago
0
Problems reading in frequency trace

#42 meikew opened 8 years ago
0
Unexpected behavior with -es and selection

#41 BenjaminPeter opened 9 years ago
2
Using -SI at time 0 produces NullPointerException

#40 paulstaab opened 9 years ago
2
Multiple gene trees outputted

#39 ksiewert opened 9 years ago
0
Origin Count dependent on time when selection starts

#38 ksiewert closed 9 years ago
1
Strange output when using -Smark and -SI together

#37 ksiewert closed 10 years ago
1
Questions on -SI, -Sc with -oOC

#36 szpiech opened 10 years ago
0
Example from manual fails

#35 szpiech closed 10 years ago
1
Unexpected non-binary allelic state at selected locus

#34 ghost closed 10 years ago
2
-Strace option gives exception

#33 ngarud opened 10 years ago
1
Difficulty with msms result when using reduced subpopulation size

#32 StevenVB12 closed 10 years ago
3
Time sampled data 2

#31 lormond opened 10 years ago
0
Beneficial allele gets lost although -SFC is set

#30 ChristianHuber closed 10 years ago
1
Problems simulating selection in different demes and at different times using an admixture model

#29 ngarud closed 10 years ago
1
Statistics and Selection

#28 Mcroze closed 10 years ago
0
Variants arise at same position as selected site... -Smark issue?

#27 leslem closed 10 years ago
1
-ej events disturb starting frequency set by -SI ... -Smark issue?

#26 leslem closed 10 years ago
1
Smark clarification

#25 leslem closed 10 years ago
1
Processing of trace file with -Strace option

#24 alexnater closed 10 years ago
0
Smark occasionally wrong

#23 ChristianHuber opened 11 years ago
3
Time sampled data

#22 lormond opened 11 years ago
2
-oOC outputs numbers larger than the sample size

#21 paula-tataru opened 11 years ago
1
Exception when using -Strace

#20 paula-tataru opened 11 years ago
2
Compatibility with ms output

#19 paula-tataru closed 11 years ago
1
Branch length precision

#18 paula-tataru closed 11 years ago
3
build 92 and java 6

#17 leslem closed 11 years ago
5
multiple alleles at non-selected site

#16 leslem closed 11 years ago
4
Choose island on which beneficial mutation arises using the -SF option

#15 kuylakop closed 11 years ago
0
Issues with complex demography and old selection events

#14 annaferrer closed 11 years ago
4
-Strace exceptions

#13 szpiech closed 11 years ago
2
Problem simulating selection with the -es and -ej options used in constructing the demography

#12 ngarud closed 11 years ago
2
java.lang.ArrayIndexOutOfBoundsException when use -Sc

#11 wavefancy closed 11 years ago
3
Something wrong for -Sc

#10 wavefancy closed 11 years ago
0
out of memory using -oTrace option

#9 ngarud closed 11 years ago
1
Problems with selection before a population split (forward in time)

#8 ChristianHuber closed 11 years ago
3
Apply -stat to SNP data

#7 grillino closed 11 years ago
1
Trying to output allele frequency trajectory in a multi-deme model

#6 ngarud closed 11 years ago
2