dib-lab distillerycats issues

dib-lab / distillerycats

Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats.

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[MRG] test functions in drop_unique_hashes

#21 bluegenes closed 3 years ago
0
[WIP] new db download with alpha, ksize considerations

#20 bluegenes opened 3 years ago
0
[WIP] add new updates from IBD pipeline, test data, etc

#19 taylorreiter opened 3 years ago
0
Add protein into main

#18 bluegenes closed 3 years ago
0
add resources, threads to snakemake rules

#17 taylorreiter opened 3 years ago
0
[WIP] Add protein

#16 bluegenes closed 3 years ago
0
[MRG] init package!

#15 bluegenes closed 3 years ago
1
write tests

#14 bluegenes opened 3 years ago
3
upgrade gather to prefetch

#13 taylorreiter opened 3 years ago
0
use genome grist to download matched gather results

#12 taylorreiter opened 3 years ago
0
run models multiple times, take shared intersect of matched assemblies

#11 taylorreiter opened 3 years ago
1
add in GTDB rs202 rep as db

#10 taylorreiter opened 3 years ago
0
Bifrost

#9 nmb85 opened 3 years ago
1
[WIP] enable protein distillerycats

#8 bluegenes closed 3 years ago
0
add documentation for how to run distillerycats

#7 taylorreiter opened 4 years ago
0
user question: can we get the k-mer counts per input sample?

#6 ctb opened 4 years ago
0
minor updates and fixes to README

#5 ctb closed 4 years ago
1
start run instructions

#4 taylorreiter closed 4 years ago
0
remove references and reliance on IBD subtype and specific studies

#3 taylorreiter closed 4 years ago
0
scripts reference or rely on IBD subtype or study

#2 taylorreiter closed 4 years ago
1
update readme

#1 taylorreiter closed 4 years ago
0