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dlce-eva
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python-nexus
python-nexus - Generic nexus (.nex, .trees) reader/writer for python
BSD 2-Clause "Simplified" License
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first stab at v3
#43
xrotwang
closed
1 year ago
20
refactor combine_nexuses
#42
SimonGreenhill
closed
1 year ago
6
taxahandler now parses labels with spaces
#41
SimonGreenhill
closed
1 year ago
0
add trees.ntaxa
#40
SimonGreenhill
closed
2 years ago
1
Fix another bug in detranslate
#39
SimonGreenhill
closed
2 years ago
1
fix minor bug in detranslate
#38
SimonGreenhill
closed
2 years ago
5
Basically PR 35 - but more robust preamble detection
#37
xrotwang
closed
2 years ago
2
Loading of Nexus files fails at attempting to decode `utf-8` data
#36
codedump
closed
2 years ago
5
only replace taxa labels in newick string
#35
SimonGreenhill
closed
2 years ago
3
added option preserve_order
#34
Bibiko
closed
2 years ago
5
handle nexus files with empty characters block (e.g. edictor)
#33
SimonGreenhill
closed
2 years ago
1
detrans2
#32
SimonGreenhill
closed
2 years ago
1
Make parsing of translate tables in tree blocks more robust
#31
SimonGreenhill
closed
2 years ago
5
add burnin functionality
#30
SimonGreenhill
closed
2 years ago
6
add better labels
#29
SimonGreenhill
closed
2 years ago
0
add fix for trailing comma in character labels
#28
SimonGreenhill
closed
2 years ago
1
Magic shortcut behaviour more consistent
#27
xrotwang
closed
2 years ago
1
Round tripping a nexus with a characters block leads to two character blocks
#26
SimonGreenhill
closed
2 years ago
4
#NEXUS should be on first line
#25
xrotwang
closed
2 years ago
1
nexus trees -n should accept a random seed option
#24
xrotwang
closed
3 years ago
3
Distances
#23
advanced373
closed
3 years ago
2
add support for wrapped data blocks
#22
xrotwang
closed
3 years ago
5
Support for non-interleaved Nexus format?
#21
mvences
closed
3 years ago
6
Remove redundant -q option
#20
xrotwang
closed
4 years ago
4
loglevel.WARN not handled in `trees` subcommand?
#19
SimonGreenhill
closed
4 years ago
5
remove kw from write_to_file
#18
SimonGreenhill
closed
4 years ago
1
Support reading nexus from stdin where appropriate
#17
xrotwang
closed
4 years ago
2
Enhanced tree handling
#16
xrotwang
closed
4 years ago
0
V2
#15
xrotwang
closed
4 years ago
7
Breaking changes
#14
xrotwang
closed
4 years ago
2
Refactor for 2.0
#13
xrotwang
closed
4 years ago
18
django.core.context_processors depreceated?
#12
SamPassmore
closed
4 years ago
2
Add `nexus.bin` to list of packages
#11
xrotwang
closed
6 years ago
7
ImportError: cannot import name bin
#10
wenheping
closed
6 years ago
5
Initial Update
#9
pyup-bot
closed
7 years ago
0
Fixing RE
#8
tresoldi
closed
7 years ago
2
Parsing trees?
#7
tresoldi
closed
4 years ago
1
Fixed RE allowing for comments (as in Mesquite export)
#6
tresoldi
closed
7 years ago
0
Refactor DataHandler
#5
SimonGreenhill
closed
6 years ago
1
DataHandler.write() adds ? to symbols
#4
SimonGreenhill
closed
6 years ago
0
DataHandler.write() loses character labels.
#3
SimonGreenhill
closed
6 years ago
0
NexusReader.write() output is not consistent
#2
SimonGreenhill
closed
5 years ago
0
UnboundLocalError: local variable 'found_ntaxa' referenced before assignment
#1
xrotwang
closed
8 years ago
3