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dms-vep
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flu_h3_hk19_dms
Analysis of a multi-mutant, barcoded influenza H3 library in the A/HongKong/45/2019 background.
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Paper revisions
#53
fwelsh
closed
5 months ago
0
update gitignore to track func_scores files
#52
fwelsh
closed
6 months ago
0
globalepistasis_fits
#51
yamin-19
closed
6 months ago
5
plot distances and compare mean group distances for escape vectors
#50
jbloom
closed
10 months ago
5
Neut validations of DMS predictions
#49
fwelsh
closed
1 year ago
1
Library design
#48
fwelsh
closed
1 year ago
0
Figure heatmaps
#47
fwelsh
closed
1 year ago
0
Add functional score analysis
#46
fwelsh
closed
1 year ago
0
filter perth09 sites correctly
#45
fwelsh
closed
1 year ago
0
save filtered df to correct file
#44
fwelsh
closed
1 year ago
0
Convert Perth09 reference sites to sequential numeric format
#43
fwelsh
closed
6 months ago
2
Pipeline outputs empty file for `results/func_scores/functional_selections.csv`
#42
fwelsh
closed
6 months ago
1
MDS analysis using just selected sites
#41
fwelsh
closed
6 months ago
4
Perth09 analysis
#40
fwelsh
closed
1 year ago
1
make docs compile
#39
jbloom
closed
1 year ago
0
re-clone dms-vep-pipeline
#38
fwelsh
closed
1 year ago
0
Pipeline fix
#37
fwelsh
closed
1 year ago
0
add data from Perth2009 DMS by Juhye Lee and Rachel Eguia
#36
jbloom
closed
1 year ago
2
Figure drafts
#35
fwelsh
closed
1 year ago
2
Finalize seq runs
#34
fwelsh
closed
1 year ago
0
MDS analysis
#33
fwelsh
closed
1 year ago
0
Mutation ic90 analysis
#32
fwelsh
closed
1 year ago
0
updated age cohort analyses + cleanup
#31
fwelsh
closed
1 year ago
0
add 230517 ferret + adult seq and analyze
#30
fwelsh
closed
1 year ago
0
update visualizations with new averaged models and save htmls
#29
fwelsh
closed
1 year ago
0
Finalized adult serum analyses
#28
fwelsh
closed
1 year ago
0
Haarvi adult sera
#27
fwelsh
closed
1 year ago
0
Finalized selections for pediatric sera
#26
fwelsh
closed
1 year ago
0
Pediatric sera analysis
#25
fwelsh
closed
1 year ago
0
230126 lib b selections
#24
fwelsh
closed
1 year ago
0
230118 lib b selections
#23
fwelsh
closed
1 year ago
0
221223 ser05 07 11 escape
#22
fwelsh
closed
1 year ago
0
Epitope deconvolution and structure mapping
#21
fwelsh
closed
1 year ago
0
Final serum neuts
#20
fwelsh
closed
1 year ago
0
221223 ser05 07 11 escape
#19
fwelsh
closed
1 year ago
0
Epitope regularization analyses
#18
fwelsh
closed
1 year ago
0
Selection conc tests
#17
fwelsh
closed
1 year ago
0
221108 selection seq
#16
fwelsh
closed
1 year ago
0
mAb selections
#15
fwelsh
closed
1 year ago
0
add neut data for updated H6 and sera 17-20 runs
#14
fwelsh
closed
2 years ago
0
220808 new sera seq
#13
fwelsh
closed
2 years ago
0
calculate fraction WT variants neutralized by mAb selections
#12
fwelsh
opened
2 years ago
0
220726 libA mAb seq - lower threshold
#11
fwelsh
closed
2 years ago
0
220726 libA mAb seq
#10
fwelsh
closed
2 years ago
0
220711 updated seq
#9
fwelsh
closed
2 years ago
0
220711 updated seq
#8
fwelsh
closed
2 years ago
0
add data and analysis for 220711_1C04_5G04 neuts
#7
fwelsh
closed
2 years ago
0
3 selection bottlenecking
#6
fwelsh
closed
2 years ago
0
220701 neut data
#5
fwelsh
closed
2 years ago
0
1 troubleshoot pipeline
#4
fwelsh
closed
2 years ago
0
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