dnbaker dashing issues - Githubissues

dnbaker / dashing

Fast and accurate genomic distances using HyperLogLog

GNU General Public License v3.0

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issues

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installation wasn't a pleasant experience

#48 rchikhi opened 4 years ago
2
Shingle

#47 dnbaker closed 4 years ago
0
Exact w-shingling

#46 dnbaker closed 4 years ago
1
Use madler/zlib to ensure that the zlib version used is recent enough.

#45 dnbaker closed 4 years ago
2
linking error in zlibWrapper

#44 osuchanglab closed 4 years ago
5
Parallel build fix

#43 dnbaker closed 4 years ago
0
Distances > 0.05 but < 1 are unreliable?

#42 wwood opened 4 years ago
2
bioconda install: Illegal instruction

#41 wwood opened 4 years ago
19
K>12 results in too many distances being 0

#40 censix closed 4 years ago
2
Nearest Neighbor Support

#39 dnbaker closed 4 years ago
0
Emit Intersection Size

#38 dnbaker opened 4 years ago
9
Using bloom filter to perform many to many comparison

#37 mihkelvaher closed 4 years ago
3
example files

#36 maojn closed 4 years ago
5
Compiling from release - empty module dirs and running in Singularity container

#35 mihkelvaher closed 4 years ago
9
Typo in output with -U?

#34 mihkelvaher closed 4 years ago
3
Threshold by similarity, maintain nearest neighbors

#33 dnbaker opened 4 years ago
0
Standard Mash-like DB lookup

#32 oschwengers closed 4 years ago
4
Can we bring dashing to bioconda?

#31 SilasK closed 4 years ago
6
Unable to install (error with make file)

#30 seanaller closed 5 years ago
2
Request: JSON output

#29 dnbaker opened 5 years ago
0
update of hll breaks the build

#28 EricDeveaud closed 5 years ago
2
Pairs

#27 dnbaker closed 5 years ago
0
Produce single sketch from multiple input files

#26 bede closed 4 years ago
4
Weighted Jaccard

#25 dnbaker closed 5 years ago
0
Cyclic hash support.

#24 dnbaker closed 5 years ago
0
compile error: ./bonsai/bonsai/include/util.h:32:25: fatal error: lazy/vector.h: No such file or directory

#23 yhg926 closed 5 years ago
12
Bug fixes for containment frontend

#22 dnbaker closed 5 years ago
0
Can't build using gcc 5.4 (Ubuntu 5.4.0-6ubuntu1~16.04.10) 5.4.0 20160609

#21 ZekunYin closed 5 years ago
10
Long options for dist and sketch

#20 dnbaker closed 5 years ago
0
Support experimental b-bit minhashing option

#19 dnbaker closed 5 years ago
0
Output tsv from `setdist` (`setdist -T` isn't working)

#18 olgabot closed 5 years ago
5
Processing each sequence in a file separately

#17 VGalata closed 4 years ago
8
Minimum k-mer abundance threshold is undocumented & omitted from usage

#16 bede closed 5 years ago
3
Optional zfp compression for large distance matrices

#15 dnbaker closed 5 years ago
1
Distance output formatting inconsistent - maybe output csv?

#14 olgabot closed 5 years ago
21
`setdist` doesn't output distances

#13 olgabot closed 5 years ago
3
Add support for 10x bam files

#12 olgabot closed 5 years ago
9
Add protein k-mers with 6-frame translation

#11 olgabot opened 5 years ago
1
[WIP] Add dockerfile

#10 olgabot closed 5 years ago
1
Build failure

#9 kloetzl closed 5 years ago
4
Option to produce PHYLIP distance matrix format

#8 kloetzl closed 5 years ago
7
Recursive checkout failure

#7 kloetzl closed 5 years ago
4
Build failure with AVX512

#6 kloetzl closed 5 years ago
5
make clean does not propagate

#5 karel-brinda closed 5 years ago
2
Can't build dashing on mac (fatal error: string.h: No such file or directory)

#4 karel-brinda closed 5 years ago
2
Can't build dashing

#3 tseemann closed 5 years ago
10
Add a description

#2 tseemann closed 6 years ago
1
Make a tag

#1 tseemann closed 6 years ago
1