dohlee metheor issues - Githubissues

dohlee / metheor

:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)

GNU General Public License v3.0

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issues

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Some problems that arise when calculating ME

#23 Jampion-Zhang opened 2 months ago
0
Metheor input and --pairs flag

#22 cgeisenberger opened 6 months ago
0
Support BED input?

#21 PanZiwei opened 9 months ago
1
Obtaining counts of CpG quartets

#20 stephenshank opened 11 months ago
0
possible errors in MHL calculation

#19 oleksii-nikolaienko opened 12 months ago
1
Use bam files with MM and ML tags with native 5mC calls, no bisulfite conversion.

#18 faulk-lab opened 1 year ago
1
thread 'main' panicked at 'slice index starts at 18446744073709551614 but ends at 123', src/tag.rs:108:39

#17 maja-glotz opened 1 year ago
2
Metheor only calculate methylation diversity based on CpG site？

#16 feihongloveworld opened 1 year ago
5
no subcommand mhl

#15 ifishlin opened 1 year ago
9
macOS M1 compiling error

#14 jianshu93 opened 1 year ago
1
Update citation in README.md

#13 BonilKoo closed 1 year ago
0
Multi-thread support for metheor tag

#12 rnbatra opened 1 year ago
2
thread 'main' panicked at 'called `Option::unwrap()` on a `None` value', src/pdr.rs:102:44

#11 hannahkimincompbio closed 1 year ago
5
thread 'main' panicked at 'index out of bounds: the len is 403 but the index is 403', src/qfdrp.rs:52:13

#10 rnbatra closed 1 year ago
11
When a read is aligned to the start of a contig

#9 litaifang closed 1 year ago
6
Add support for when the genome reference contains IUPAC (e.g., R for A/G, Y for C/T, etc.) codes in them?

#8 litaifang closed 1 year ago
2
Fix to handle deletions at end of read

#7 ggydush closed 1 year ago
2
thread 'main' panicked at 'index out of bounds: the len is 103 but the index is 103', src/qfdrp.rs:52:13

#6 RysBen closed 1 year ago
3
Documentation on output files

#5 GMFranceschini closed 1 year ago
3
How does metheor handle the two overlapped reads originated from the same fragment?

#4 ryansohny opened 1 year ago
2
Changing my e-mail address

#3 jwyang21 closed 2 years ago
1
Update lib.rs

#2 jwyang21 closed 2 years ago
1
Update lib.rs

#1 BonilKoo closed 2 years ago
1